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NUP210L nucleoporin 210 like [ Homo sapiens (human) ]

Gene ID: 91181, updated on 23-Nov-2021

Summary

Official Symbol
NUP210Lprovided by HGNC
Official Full Name
nucleoporin 210 likeprovided by HGNC
Primary source
HGNC:HGNC:29915
See related
Ensembl:ENSG00000143552
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 16.4) See more
Orthologs
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Genomic context

See NUP210L in Genome Data Viewer
Location:
1q21.3
Exon count:
40
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (153992582..154155116, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (153965166..154127592, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RAB13, member RAS oncogene family Neighboring gene ribosomal protein L34 pseudogene 5 Neighboring gene ribosomal protein S27 Neighboring gene RNA, U6 small nuclear 179, pseudogene Neighboring gene ribosomal protein S7 pseudogene 2 Neighboring gene microRNA 5698 Neighboring gene RNA, 7SL, cytoplasmic 431, pseudogene Neighboring gene tropomyosin 3 Neighboring gene microRNA 190b

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
part_of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
nuclear pore membrane glycoprotein 210-like
Names
nuclear pore membrane glycoprotein 210-like (LOC91181)
nucleoporin 210kDa like
nucleoporin Nup210-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001159484.1NP_001152956.1  nuclear pore membrane glycoprotein 210-like isoform 2 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two coding exons in the 3' region, compared to variant 1. The resulting isoform (2) lacks an internal segment but has identical N- and C-termini, compared to isoform 1.
    Source sequence(s)
    AK128000, AL133633, AL513546, AL833964, BX648132
    Consensus CDS
    CCDS53370.1
    UniProtKB/Swiss-Prot
    Q5VU65
    Related
    ENSP00000271854.3, ENST00000271854.3
    Conserved Domains (2) summary
    pfam02368
    Location:10831157
    Big_2; Bacterial Ig-like domain (group 2)
    cl00732
    Location:274383
    Arch_flagellin; Archaebacterial flagellin
  2. NM_207308.2NP_997191.2  nuclear pore membrane glycoprotein 210-like isoform 1 precursor

    See identical proteins and their annotated locations for NP_997191.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AK125924, AK128000, AL513546, AL833964, BX648132
    Consensus CDS
    CCDS41399.1
    UniProtKB/Swiss-Prot
    Q5VU65
    Related
    ENSP00000357547.3, ENST00000368559.7
    Conserved Domains (2) summary
    pfam02368
    Location:10831157
    Big_2; Bacterial Ig-like domain (group 2)
    cl00732
    Location:274383
    Arch_flagellin; Archaebacterial flagellin

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    153992582..154155116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017002788.2XP_016858277.1  nuclear pore membrane glycoprotein 210-like isoform X1

  2. XM_011510123.2XP_011508425.1  nuclear pore membrane glycoprotein 210-like isoform X3

    Conserved Domains (2) summary
    pfam02368
    Location:10831157
    Big_2; Bacterial Ig-like domain (group 2)
    cl00732
    Location:274383
    Arch_flagellin; Archaebacterial flagellin
  3. XM_011510122.1XP_011508424.1  nuclear pore membrane glycoprotein 210-like isoform X2

    Conserved Domains (2) summary
    pfam02368
    Location:10391113
    Big_2; Bacterial Ig-like domain (group 2)
    cl00732
    Location:230339
    Arch_flagellin; Archaebacterial flagellin
  4. XM_011510124.2XP_011508426.1  nuclear pore membrane glycoprotein 210-like isoform X4

    Conserved Domains (2) summary
    pfam02368
    Location:10831157
    Big_2; Bacterial Ig-like domain (group 2)
    cl00732
    Location:274383
    Arch_flagellin; Archaebacterial flagellin
  5. XM_017002789.2XP_016858278.1  nuclear pore membrane glycoprotein 210-like isoform X5

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