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RAPGEF4-AS1 RAPGEF4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 91149, updated on 13-May-2022

Summary

Official Symbol
RAPGEF4-AS1provided by HGNC
Official Full Name
RAPGEF4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:28081
See related
Ensembl:ENSG00000228016 AllianceGenome:HGNC:28081
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See RAPGEF4-AS1 in Genome Data Viewer
Location:
2q31.1
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (172723189..172736206, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (173209664..173222699, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (173587917..173600934, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase kinase 1 Neighboring gene Sharpr-MPRA regulatory region 7042 Neighboring gene small nucleolar RNA U13 Neighboring gene Rap guanine nucleotide exchange factor 4 Neighboring gene aldehyde dehydrogenase 7 family member A1 pseudogene 2 Neighboring gene mitogen-activated protein kinase kinase kinase 20 Neighboring gene MAP3K20 antisense RNA 1 Neighboring gene VISTA enhancer hs242

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • RAPGEF4 antisense RNA 1 (non-protein coding)

Clone Names

  • AC018712.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026995.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018712
    Related
    ENST00000435328.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    172723189..172736206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    173209664..173222699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)