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XKRY XK related, Y-linked, pseudogene [ Homo sapiens (human) ]

Gene ID: 9082, updated on 25-Oct-2022

Summary

Official Symbol
XKRYprovided by HGNC
Official Full Name
XK related, Y-linked, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:18571
See related
Ensembl:ENSG00000290724 MIM:400015; AllianceGenome:HGNC:18571
Gene type
pseudo
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
XKRY1
Summary
This probable pseudogene is located in the nonrecombining portion of the Y chromosome, and is expressed specifically in testis. It is similar to the XK (X-linked Kell blood group precursor) gene, which encodes a putative membrane transport protein. This gene is present as two identical copies within a palindromic region; this record represents the more centromeric copy. [provided by RefSeq, Nov 2020]
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Genomic context

See XKRY in Genome Data Viewer
Location:
Yq11.222
Exon count:
1
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (17768980..17770560, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (18675537..18677117, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (19880860..19882440, complement)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene PTPN13 like Y-linked pseudogene 1 Neighboring gene actin gamma 1 pseudogene 2 Neighboring gene USP9Y pseudogene 23 Neighboring gene RNA, U1 small nuclear 128, pseudogene Neighboring gene USP9Y pseudogene 27

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • X Kell blood group precursor-related, Y-linked
  • X-linked Kx blood group related, Y-linked
  • XK related, Y-linked
  • XK, Kell blood group complex subunit-related, Y-linked
  • testis-specific XK-related protein on Y
  • testis-specific XK-related protein, Y-linked 2

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in single fertilization TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171026.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC007742
    Related
    ENST00000624960.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    17768980..17770560 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    18675537..18677117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_032917.1: Suppressed sequence

    Description
    NG_032917.1: This RefSeq was removed because the gene type has changed from protein-coding to transcribed pseudogene. The protein-coding reference transcript on this RefSeqGene has been replaced by a non-coding transcript.