U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

fpvI RNA polymerase sigma factor [ Pseudomonas aeruginosa PAO1 ]

Gene ID: 882249, updated on 6-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
fpvI
Gene description
RNA polymerase sigma factor
Primary source
PseudoCap:PA2387
Locus tag
PA2387
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas aeruginosa PAO1 (strain: PAO1)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_002516.2 (2640392..2640871, complement)

NC_002516.2Genomic Context describing neighboring genes Neighboring gene acyl-homoserine lactone acylase PvdQ Neighboring gene L-ornithine N5-oxygenase Neighboring gene protein FpvR Neighboring gene pyoverdine biosynthesis protein PvdR Neighboring gene pyoverdine biosynthesis protein PvdT

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_002516.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
  2. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
  3. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article
  4. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Salunkhe P, et al. J Bacteriol, 2005 Jul. PMID 15995206, Free PMC Article
  5. Effect of anaerobiosis and nitrate on gene expression in Pseudomonas aeruginosa. Filiatrault MJ, et al. Infect Immun, 2005 Jun. PMID 15908409, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PseudoCAP

Function Evidence Code Pubs
enables sigma factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables sigma factor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables sigma factor activity ISA
Inferred from Sequence Alignment
more info
 PubMed 
enables sigma factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of biological process IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
RNA polymerase sigma factor
NP_251077.1
  • Product name confidence: class 1: Function experimentally demonstrated in P. aeruginosa.

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002516.2 Reference assembly

    Range
    2640392..2640871 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_251077.1 RNA polymerase sigma factor [Pseudomonas aeruginosa PAO1]

    See identical proteins and their annotated locations for NP_251077.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q5DIV3
    Conserved Domains (1) summary
    PRK12527
    Location:1 → 159
    PRK12527; RNA polymerase sigma factor; Reviewed
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials