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gadB glutamate decarboxylase [ Dictyostelium discoideum AX4 ]

Gene ID: 8626767, updated on 18-Sep-2024

Summary

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Official Symbol
gadB
Official Full Name
glutamate decarboxylase
Primary source
dictyBase:DDB_G0288715
Locus tag
DDB_G0288715
See related
AmoebaDB:DDB_G0288715; VEuPathDB:DDB_G0288715
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0188068; DDBDRAFT_0231439; DDB_0188068; DDB_0231439
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_007091.3 (1865900..1867387)

Chromosome 5 - NC_007091.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007091.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic analysis of γ-aminobutyric acid (GABA) metabolism and function in the social amoeba Dictyostelium discoideum. Wu Y, et al. J Biol Chem, 2013 May 24. PMID 23548898, Free PMC Article
  2. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables glutamate decarboxylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables glutamate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
  
enables glutamate decarboxylase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within aggregation involved in sorocarp development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in glutamate catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within glutamate catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in glutamate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
glutamate decarboxylase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007091.3 Reference assembly

    Range
    1865900..1867387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_631501.1 → XP_636593.1  glutamate decarboxylase [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_636593.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q54IJ3
    Conserved Domains (1) summary
    cl18945
    Location:16 → 444
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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