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hypothetical protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8626577, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein
Primary source
dictyBase:DDB_G0288345
Locus tag
DDB_G0288345
See related
AmoebaDB:DDB_G0288345; VEuPathDB:DDB_G0288345
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0187898; DDB_0187898
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_007091.3 (1413915..1415658)

Chromosome 5 - NC_007091.3Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex, 16 kDa subunit Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene H/ACA RNP complex subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007091.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin conjugating enzyme activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in protein polyubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
hypothetical protein
XP_636774.1
  • Ubiquitin-conjugating enzyme protein UbcC (EC 6.3.2.19) (Ubiquitin- conjugating enzyme E2) (Ubiquitin-protein ligase) (Ubiquitin carrier protein)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007091.3 Reference assembly

    Range
    1413915..1415658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_631682.1 → XP_636774.1  hypothetical protein DDB_G0288345 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_636774.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q54J27
    Conserved Domains (2) summary
    COG5078
    Location:61 → 180
    COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    pfam00179
    Location:61 → 173
    UQ_con; Ubiquitin-conjugating enzyme
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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