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limB LIM-type zinc finger-containing protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8624865, updated on 18-Sep-2024

Summary

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Official Symbol
limB
Official Full Name
LIM-type zinc finger-containing protein
Primary source
dictyBase:DDB_G0284863
Locus tag
DDB_G0284863
See related
AmoebaDB:DDB_G0284863; VEuPathDB:DDB_G0284863
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0186278; DDBDRAFT_0191245; DDB_0186278; DDB_0191245
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_007090.3 (2691906..2693567)

Chromosome 4 - NC_007090.3Genomic Context describing neighboring genes Neighboring gene 5-oxo-L-proline amidohydrolase Neighboring gene P-type ATPase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007090.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Dictyostelium LIM domain-containing protein LIM2 is essential for proper chemotaxis and morphogenesis. Chien S, et al. Mol Biol Cell, 2000 Apr. PMID 10749929, Free PMC Article
  2. Microtubule-Mediated Inositol Lipid Signaling Plays Critical Roles in Regulation of Blebbing. Sugiyama T, et al. PLoS One, 2015. PMID 26317626, Free PMC Article
  3. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within aggregation involved in sorocarp development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within bleb assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cell adhesion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in chemotaxis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chemotaxis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within culmination involved in sorocarp development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cell cortex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cell cortex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
LIM-type zinc finger-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007090.3 Reference assembly

    Range
    2691906..2693567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_634861.1 → XP_639953.1  LIM-type zinc finger-containing protein [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_639953.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q54NW4, Q9U628
    Conserved Domains (3) summary
    cd09334
    Location:388 → 441
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd08368
    Location:265 → 315
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl02475
    Location:207 → 257
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
Nucleotide Protein
Heading Accession and Version

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