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4cl2 4-coumarate-CoA ligase [ Dictyostelium discoideum AX4 ]

Gene ID: 8624749, updated on 18-Sep-2024

Summary

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Official Symbol
4cl2
Official Full Name
4-coumarate-CoA ligase
Primary source
dictyBase:DDB_G0284745
Locus tag
DDB_G0284745
See related
AmoebaDB:DDB_G0284745; VEuPathDB:DDB_G0284745
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0186166; DDBDRAFT_0231736; DDB_0186166; DDB_0231736
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_007090.3 (2413291..2415024, complement)

Chromosome 4 - NC_007090.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene 4-coumarate-CoA ligase Neighboring gene 4-coumarate-CoA ligase Neighboring gene exocyst complex subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007090.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables 4-coumarate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables CoA-ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in phenylpropanoid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
4-coumarate-CoA ligase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007090.3 Reference assembly

    Range
    2413291..2415024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_633288.1 → XP_638380.1  4-coumarate-CoA ligase [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_638380.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q54P78
    Conserved Domains (2) summary
    cd05911
    Location:42 → 539
    Firefly_Luc_like; Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)
    PLN02246
    Location:11 → 544
    PLN02246; 4-coumarate--CoA ligase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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