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gtaU GATA zinc finger domain-containing protein 21 [ Dictyostelium discoideum AX4 ]

Gene ID: 8622748, updated on 18-Sep-2024

Summary

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Official Symbol
gtaU
Official Full Name
GATA zinc finger domain-containing protein 21
Primary source
dictyBase:DDB_G0280853
Locus tag
DDB_G0280853
See related
AmoebaDB:DDB_G0280853; VEuPathDB:DDB_G0280853
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0215210; DDBDRAFT_0220475; DDB_0215210; DDB_0220475
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_007089.4 (3790224..3791400)

Chromosome 3 - NC_007089.4Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene protein kinase, CMGC group Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007089.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
GATA zinc finger domain-containing protein 21

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007089.4 Reference assembly

    Range
    3790224..3791400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_635852.1 → XP_640944.1  hypothetical protein DDB_G0280853 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_640944.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q54US7
    Conserved Domains (2) summary
    smart00401
    Location:234 → 281
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cl00158
    Location:238 → 291
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
Heading Accession and Version

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