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crop Luc7 family protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8621704, updated on 23-Nov-2023

Summary

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Gene symbol
crop
Gene description
Luc7 family protein
Primary source
dictyBase:DDB_G0278799
Locus tag
DDB_G0278799
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0206200; DDBDRAFT_0233514; DDB_0206200; DDB_0233514
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_007089.4 (1204493..1206040, complement)

Chromosome 3 - NC_007089.4Genomic Context describing neighboring genes Neighboring gene C3HC4-type zinc finger-containing protein Neighboring gene GPS domain-containing protein Neighboring gene hypothetical protein Neighboring gene tRNA-dihydrouridine synthase 1-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007089.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within RNA splicing ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in RNA splicing ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in mRNA splice site recognition IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA splice site recognition ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of U1 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
  
part_of U1 snRNP ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of U2-type prespliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Names
Luc7 family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007089.4 Reference assembly

    Range
    1204493..1206040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_636880.1 → XP_641972.1  hypothetical protein DDB_G0278799 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_641972.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q54XQ8
    Conserved Domains (2) summary
    COG5200
    Location:5 → 241
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:2 → 248
    LUC7; LUC7 N_terminus
Nucleotide Protein
Heading Accession and Version

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