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alfA hypothetical protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8619691, updated on 18-Sep-2024

Summary

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Official Symbol
alfA
Official Full Name
hypothetical protein
Primary source
dictyBase:DDB_G0274391
Locus tag
DDB_G0274391
See related
AmoebaDB:DDB_G0274391; VEuPathDB:DDB_G0274391
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0167570; DDBDRAFT_0185016; DDB_0167570; DDB_0185016
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_007088.5 (4784888..4786574, complement)

Chromosome 2 - NC_007088.5Genomic Context describing neighboring genes Neighboring gene peptidase C19 family protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007088.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A cis-acting element responsible for early gene induction by extracellular cAMP in Dictyostelium discoideum. May T, et al. Mech Dev, 1991 Feb. PMID 1851628
  2. Purification and properties of a secreted and developmentally regulated alpha-L-fucosidase from Dictyostelium discoideum. Schopohl D, et al. J Biol Chem, 1992 Feb 5. PMID 1310316
  3. Sequence and analysis of chromosome 2 of Dictyostelium discoideum. Glöckner G, et al. Nature, 2002 Jul 4. PMID 12097910
  4. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables 1,6-alpha-L-fucosidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables alpha-L-fucosidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables alpha-L-fucosidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables alpha-L-fucosidase activity IEA
Inferred from Electronic Annotation
more info
  
enables fucosidase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in fucose metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in fucose metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in fucose metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in glycoside catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within response to cAMP IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in extracellular region IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in lysosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in lysosome IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007088.5 Reference assembly

    Range
    4784888..4786574 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_639171.1 → XP_644263.1  hypothetical protein DDB_G0274391 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_644263.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P10901, Q554R0
    Conserved Domains (3) summary
    smart00812
    Location:17 → 404
    Alpha_L_fucos; Alpha-L-fucosidase
    COG3669
    Location:47 → 368
    AfuC; Alpha-L-fucosidase [Carbohydrate transport and metabolism]
    pfam16757
    Location:374 → 458
    Fucosidase_C; Alpha-L-fucosidase C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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