U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

C2H2-type zinc finger-containing protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8618442, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
C2H2-type zinc finger-containing protein
Primary source
dictyBase:DDB_G0272202
Locus tag
DDB_G0272202
See related
AmoebaDB:DDB_G0272202; VEuPathDB:DDB_G0272202
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0168784; DDBDRAFT_0233553; DDB_0168784; DDB_0233553
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_007088.5 (1651021..1652935)

Chromosome 2 - NC_007088.5Genomic Context describing neighboring genes Neighboring gene ARF/SAR superfamily protein Neighboring gene actin related protein 2 Neighboring gene Fis-type helix-turn-helix domain-containing protein Neighboring gene protein phosphatase 6 catalytic subunit

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_007088.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of Dictyostelium discoideum. Glöckner G, et al. Nature, 2002 Jul 4. PMID 12097910
  2. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein K48-linked ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in intracellular membrane-bounded organelle IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in lysosome IEA
Inferred from Electronic Annotation
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
C2H2-type zinc finger-containing protein
Names
RING zinc finger-containing protein
SPla/RYanodine receptor SPRY domain-containing protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007088.5 Reference assembly

    Range
    1651021..1652935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_640184.1 → XP_645276.1  C2H2-type zinc finger-containing protein [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_645276.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q559Q8, Q75JS0
    Conserved Domains (3) summary
    pfam05605
    Location:416 → 470
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
    pfam13639
    Location:496 → 536
    zf-RING_2; Ring finger domain
    cd11709
    Location:56 → 168
    SPRY; SPRY domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Miscellaneous