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GRAM domain-containing protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8615952, updated on 18-Sep-2024

Summary

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Official Full Name
GRAM domain-containing protein
Primary source
dictyBase:DDB_G0267590
Locus tag
DDB_G0267590
See related
AmoebaDB:DDB_G0267590; VEuPathDB:DDB_G0267590
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0189391; DDBDRAFT_0237970; DDB_0189391; DDB_0237970
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_007087.3 (381029..382632, complement)

Chromosome 1 - NC_007087.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene prefoldin beta-like domain containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007087.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomics fingerprinting of phagosome maturation and evidence for the role of a Galpha during uptake. Gotthardt D, et al. Mol Cell Proteomics, 2006 Dec. PMID 16926386
  2. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in phagocytic vesicle HDA PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
GRAM domain-containing protein
Names
v-SNARE family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007087.3 Reference assembly

    Range
    381029..382632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_642057.1 → XP_647149.1  GRAM domain-containing protein [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_647149.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q55GN5
    Conserved Domains (3) summary
    cd15841
    Location:403 → 459
    SNARE_Qc; SNARE motif, subgroup Qc
    cd15861
    Location:140 → 207
    SNARE_SNAP25N_23N_29N_SEC9N; N-terminal SNARE motif of SNAP25, SNAP23, SNAP29, and SEC9
    cl17171
    Location:26 → 114
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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