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CBG05428 Protein CBG05428 [ Caenorhabditis briggsae ]

Gene ID: 8575554, updated on 30-Nov-2023

Summary

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Gene symbol
CBG05428
Gene description
Protein CBG05428
Locus tag
CBG_05428
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See CBG05428 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
10
Sequence:
Chromosome: IV; NC_013487.2 (6999304..7003079)

Chromosome IV - NC_013487.2Genomic Context describing neighboring genes Neighboring gene Protein CBR-PQN-89 Neighboring gene Protein CBG05429 Neighboring gene Protein CBG05427 Neighboring gene Protein CBG05426

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013487.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBG05428
XP_045092938.1
  • contains similarity to Pfam domains PF00077 (Retroviral aspartyl protease), PF08284 (Retroviral aspartyl protease), PF09668 (Aspartyl protease), PF01697 (Glycosyltransferase family 92) contains similarity to Interpro domains IPR013242 (Retroviral aspartyl protease), IPR019103 (Peptidase aspartic, eukaryotic predicted), IPR018061 (Peptidase A2A, retrovirus RVP subgroup), IPR008166 (Domain of unknown function DUF23);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013487.2 Reference assembly

    Range
    6999304..7003079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045235410.1 → XP_045092938.1  Protein CBG05428 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8WZU9
    Conserved Domains (2) summary
    pfam09668
    Location:649 → 773
    Asp_protease; Aspartyl protease
    pfam01697
    Location:177 → 420
    Glyco_transf_92; Glycosyltransferase family 92
Nucleotide Protein
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