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FIBCD1 fibrinogen C domain containing 1 [ Homo sapiens (human) ]

Gene ID: 84929, updated on 4-May-2020

Summary

Official Symbol
FIBCD1provided by HGNC
Official Full Name
fibrinogen C domain containing 1provided by HGNC
Primary source
HGNC:HGNC:25922
See related
Ensembl:ENSG00000130720 MIM:613357
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
FIBCD1 is a conserved type II transmembrane endocytic receptor that binds chitin and is located primarily in the intestinal brush border (Schlosser et al., 2009 [PubMed 19710473]).[supplied by OMIM, Apr 2010]
Expression
Biased expression in testis (RPKM 2.4), adrenal (RPKM 1.6) and 6 other tissues See more
Orthologs

Genomic context

See FIBCD1 in Genome Data Viewer
Location:
9q34.12
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (130902438..130939247, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (133777825..133814455, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ABL breakpoint recombination region Neighboring gene ribosomal protein L37 pseudogene 17 Neighboring gene ABL proto-oncogene 1, non-receptor tyrosine kinase Neighboring gene pyroglutamylated RFamide peptide Neighboring gene uncharacterized LOC105376297 Neighboring gene laminin subunit gamma 3 Neighboring gene LAMC3 intron enhancer-blocking element 9-5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ14810

Gene Ontology Provided by GOA

Function Evidence Code Pubs
chitin binding IDA
Inferred from Direct Assay
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
collagen-containing extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
fibrinogen C domain-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145106.1NP_001138578.1  fibrinogen C domain-containing protein 1

    See identical proteins and their annotated locations for NP_001138578.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AL161733, BC032953, DC404353
    Consensus CDS
    CCDS6937.1
    UniProtKB/Swiss-Prot
    Q8N539
    Related
    ENSP00000414501.1, ENST00000448616.5
    Conserved Domains (1) summary
    cd00087
    Location:241457
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
  2. NM_032843.5NP_116232.3  fibrinogen C domain-containing protein 1

    See identical proteins and their annotated locations for NP_116232.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL161733, BC032953
    Consensus CDS
    CCDS6937.1
    UniProtKB/Swiss-Prot
    Q8N539
    Related
    ENSP00000361413.4, ENST00000372338.9
    Conserved Domains (1) summary
    cd00087
    Location:241457
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    130902438..130939247 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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