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ATP1A1-AS1 ATP1A1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 84852, updated on 25-Jan-2022

Summary

Official Symbol
ATP1A1-AS1provided by HGNC
Official Full Name
ATP1A1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:28262
See related
Ensembl:ENSG00000203865 MIM:618305; AllianceGenome:HGNC:28262
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ATP1A1OS; C1orf203
Expression
Ubiquitous expression in kidney (RPKM 93.4), duodenum (RPKM 80.0) and 25 other tissues See more
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Genomic context

See ATP1A1-AS1 in Genome Data Viewer
Location:
1p13.1
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (116392865..116418622, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (116935487..116961244, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378919 Neighboring gene uncharacterized LOC105378920 Neighboring gene ATPase Na+/K+ transporting subunit alpha 1 Neighboring gene Sharpr-MPRA regulatory region 13778 Neighboring gene RNA, U6 small nuclear 817, pseudogene Neighboring gene long intergenic non-protein coding RNA 1762 Neighboring gene HNF1 motif-containing MPRA enhancer 99 Neighboring gene uncharacterized LOC112268235 Neighboring gene CD58 molecule

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024124.2 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (5) includes a terminal exon that overlaps, on the opposite strand, the terminus of the ATP1A1 gene (GeneID: 476).
    Source sequence(s)
    BC069003, BC098428
  2. NR_024125.2 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (4) includes an alternate exon compared to variant 5.
    Source sequence(s)
    AL136376, BC098428, BX389823
    Related
    ENST00000369492.5
  3. NR_024126.1 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (3) includes an alternate exon compared to variant 5.
    Source sequence(s)
    BC007373
  4. NR_027645.1 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (2) has an alternate terminal exon compared to variant 1.
    Source sequence(s)
    BC028281
  5. NR_027646.1 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (1) had an alternate terminal exon and overlaps, on the opposite strand, the the ATP1A1 gene (GeneID: 476).
    Source sequence(s)
    DC351073

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    116392865..116418622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_032766.1: Suppressed sequence

    Description
    NM_032766.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
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