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ZMYND12 zinc finger MYND-type containing 12 [ Homo sapiens (human) ]

Gene ID: 84217, updated on 11-Jun-2021

Summary

Official Symbol
ZMYND12provided by HGNC
Official Full Name
zinc finger MYND-type containing 12provided by HGNC
Primary source
HGNC:HGNC:21192
See related
Ensembl:ENSG00000066185
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 21.0), kidney (RPKM 3.5) and 7 other tissues See more
Orthologs
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Genomic context

See ZMYND12 in Genome Data Viewer
Location:
1p34.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (42430329..42456022, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (42896000..42921693, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene forkhead box J3 Neighboring gene ribosomal modification protein rimK like family member A Neighboring gene ribosomal protein S15a pseudogene 8 Neighboring gene coiled-coil domain containing 30 Neighboring gene phosphopantothenoylcysteine synthetase Neighboring gene RPS3A pseudogene 11

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • DKFZp434N2435

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
zinc finger MYND domain-containing protein 12
Names
zinc finger, MYND domain containing 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001146192.2NP_001139664.1  zinc finger MYND domain-containing protein 12 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
    Source sequence(s)
    AK057384, AK301839, AL136858, BC024186, BQ441452
    UniProtKB/Swiss-Prot
    Q9H0C1
    UniProtKB/TrEMBL
    B4DX70
    Conserved Domains (2) summary
    sd00006
    Location:6495
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:64133
    TPR_12; Tetratricopeptide repeat
  2. NM_032257.5NP_115633.3  zinc finger MYND domain-containing protein 12 isoform 1

    See identical proteins and their annotated locations for NP_115633.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK057384, AL136858, BC024186, BQ441452
    Consensus CDS
    CCDS467.1
    UniProtKB/Swiss-Prot
    Q9H0C1
    Related
    ENSP00000361646.3, ENST00000372565.8
    Conserved Domains (3) summary
    sd00006
    Location:88116
    TPR; TPR repeat [structural motif]
    pfam01753
    Location:1754
    zf-MYND; MYND finger
    pfam13424
    Location:174243
    TPR_12; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    42430329..42456022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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