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ANKRD20A1 ankyrin repeat domain 20 family member A1 [ Homo sapiens (human) ]

Gene ID: 84210, updated on 13-Mar-2020

Summary

Official Symbol
ANKRD20A1provided by HGNC
Official Full Name
ankyrin repeat domain 20 family member A1provided by HGNC
Primary source
HGNC:HGNC:23665
See related
Ensembl:ENSG00000260691
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ANKRD20A
Expression
Broad expression in testis (RPKM 5.3), lung (RPKM 0.9) and 14 other tissues See more
Orthologs

Genomic context

See ANKRD20A1 in Genome Data Viewer
Location:
9q21.11
Exon count:
15
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (67858931..67902394)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (67926761..67969840)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987076 Neighboring gene uncharacterized LOC101928608 Neighboring gene RNA, U6 small nuclear 368, pseudogene Neighboring gene ankyrin repeat domain 18A pseudogene Neighboring gene COBW domain containing 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
ankyrin repeat domain-containing protein 20A1
Names
ankyrin repeat domain 20A
epididymis secretory sperm binding protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032250.5NP_115626.2  ankyrin repeat domain-containing protein 20A1

    See identical proteins and their annotated locations for NP_115626.2

    Status: VALIDATED

    Source sequence(s)
    BX649567
    Consensus CDS
    CCDS6620.1
    UniProtKB/Swiss-Prot
    Q5TYW2
    Related
    ENSP00000477695.1, ENST00000562196.5
    Conserved Domains (4) summary
    cd00204
    Location:61186
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:99130
    ANK; ANK repeat [structural motif]
    pfam09731
    Location:291690
    Mitofilin; Mitochondrial inner membrane protein
    pfam14915
    Location:514805
    CCDC144C; CCDC144C protein coiled-coil region

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    67858931..67902394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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