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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_032027.3 → NP_114416.1 TM2 domain-containing protein 1 precursor
See identical proteins and their annotated locations for NP_114416.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the protein-coding transcript.
- Source sequence(s)
-
AC099791
- Consensus CDS
-
CCDS65554.1
- UniProtKB/Swiss-Prot
- A6NDA8, Q9BX74
- Related
- ENSP00000475700.1, ENST00000606498.5
- Conserved Domains (1) summary
-
- pfam05154
Location:117 → 166
- TM2; TM2 domain
RNA
-
NR_135160.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC099791, AF353990, AK311705, BC029486, BG700625
-
NR_135161.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC099791, AF353990, AI168073, AK311705, BC029486
-
NR_135162.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses two alternate splice junctions and contains an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC099791, AF353990, AK311705, BC029486, BU664262
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
61681046..61725141 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047431744.1 → XP_047287700.1 TM2 domain-containing protein 1 isoform X2
-
XM_047431745.1 → XP_047287701.1 TM2 domain-containing protein 1 isoform X2
-
XM_047431743.1 → XP_047287699.1 TM2 domain-containing protein 1 isoform X1
RNA
-
XR_007064044.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
61559915..61604010 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)