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SNN stannin [ Homo sapiens (human) ]

Gene ID: 8303, updated on 7-Dec-2018

Summary

Official Symbol
SNNprovided by HGNC
Official Full Name
stanninprovided by HGNC
Primary source
HGNC:HGNC:11149
See related
Ensembl:ENSG00000184602 MIM:603032
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in fat (RPKM 84.3), brain (RPKM 72.2) and 23 other tissues See more
Orthologs

Genomic context

See SNN in Genome Data Viewer
Location:
16p13.13
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 16 NC_000016.10 (11668433..11679159)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (11762289..11773015)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene vitellogenin Neighboring gene uncharacterized LOC101927131 Neighboring gene lipopolysaccharide induced TNF factor Neighboring gene uncharacterized LOC107984880 Neighboring gene nonconserved acetylation island sequence 94 enhancer Neighboring gene thioredoxin domain containing 11 Neighboring gene zinc finger CCCH-type containing 7A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
response to toxic substance TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_003498.6NP_003489.1  stannin

    See identical proteins and their annotated locations for NP_003489.1

    Status: VALIDATED

    Source sequence(s)
    AL538273, BC036443
    Consensus CDS
    CCDS10549.1
    UniProtKB/Swiss-Prot
    O75324
    Related
    ENSP00000329287.5, ENST00000329565.5
    Conserved Domains (3) summary
    pfam09051
    Location:6187
    SNN_cytoplasm; Stannin cytoplasmic
    pfam09049
    Location:233
    SNN_transmemb; Stannin transmembrane
    pfam09050
    Location:3459
    SNN_linker; Stannin unstructured linker

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p12 Primary Assembly

    Range
    11668433..11679159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017023742.1XP_016879231.1  stannin isoform X2

    UniProtKB/Swiss-Prot
    O75324
    Conserved Domains (3) summary
    pfam09051
    Location:6187
    SNN_cytoplasm; Stannin cytoplasmic
    pfam09049
    Location:233
    SNN_transmemb; Stannin transmembrane
    pfam09050
    Location:3459
    SNN_linker; Stannin unstructured linker
  2. XM_017023741.1XP_016879230.1  stannin isoform X1

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