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KLTH0D06028g KLTH0D06028p [ Lachancea thermotolerans CBS 6340 ]

Gene ID: 8295213, updated on 21-Dec-2023

Summary

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Gene symbol
KLTH0D06028g
Gene description
KLTH0D06028p
Locus tag
KLTH0D06028g
Gene type
protein coding
RNA name
KLTH0D06028p
RefSeq status
PROVISIONAL
Organism
Lachancea thermotolerans CBS 6340 (strain: CBS 6340)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Lachancea
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Genomic context

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See KLTH0D06028g in Genome Data Viewer
Location:
chromosome: D
Exon count:
1
Sequence:
Chromosome: D; NC_013080.1 (535827..540188, complement)

Chromosome D - NC_013080.1Genomic Context describing neighboring genes Neighboring gene KLTH0D05984p Neighboring gene KLTH0D06006p Neighboring gene mRNA turnover protein MRT4 Neighboring gene KLTH0D06072p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013080.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of protoploid Saccharomycetaceae. Génolevures Consortium, et al. Genome Res, 2009 Oct. PMID 19525356, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
KLTH0D06028p
XP_002552983.1
  • similar to uniprot|P33202 Saccharomyces cerevisiae YKL010C UFD4 Ubiquitin-protein ligase (E3) that interacts with Rpt4p and Rpt6p two subunits of the 19S particle of the 26S proteasome cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013080.1 Reference assembly

    Range
    535827..540188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002552937.1 → XP_002552983.1  KLTH0D06028p [Lachancea thermotolerans CBS 6340]

    See identical proteins and their annotated locations for XP_002552983.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C5DGK3
    Conserved Domains (2) summary
    smart00119
    Location:1105 → 1448
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cl00077
    Location:1081 → 1448
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
Nucleotide Protein
Heading Accession and Version

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