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KLTH0H08646g KLTH0H08646p [ Lachancea thermotolerans CBS 6340 ]

Gene ID: 8294574, updated on 21-Dec-2023

Summary

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Gene symbol
KLTH0H08646g
Gene description
KLTH0H08646p
Locus tag
KLTH0H08646g
Gene type
protein coding
RNA name
KLTH0H08646p
RefSeq status
PROVISIONAL
Organism
Lachancea thermotolerans CBS 6340 (strain: CBS 6340)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Lachancea
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Genomic context

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See KLTH0H08646g in Genome Data Viewer
Location:
chromosome: H
Exon count:
1
Sequence:
Chromosome: H; NC_013084.1 (750413..752113)

Chromosome H - NC_013084.1Genomic Context describing neighboring genes Neighboring gene KLTH0H08602p Neighboring gene mitochondrial 54S ribosomal protein YmL15 Neighboring gene KLTH0H08668p Neighboring gene KLTH0H08690p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013084.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of protoploid Saccharomycetaceae. Génolevures Consortium, et al. Genome Res, 2009 Oct. PMID 19525356, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
KLTH0H08646p
XP_002556250.1
  • highly similar to uniprot|P45818 Saccharomyces cerevisiae YGL171W ROK1 ATP-dependent RNA helicase of the DEAD box family required for 18S rRNA synthesis

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013084.1 Reference assembly

    Range
    750413..752113
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002556204.1 → XP_002556250.1  KLTH0H08646p [Lachancea thermotolerans CBS 6340]

    See identical proteins and their annotated locations for XP_002556250.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C5E2X7
    Conserved Domains (4) summary
    smart00487
    Location:142 → 351
    DEXDc; DEAD-like helicases superfamily
    pfam00271
    Location:361 → 465
    Helicase_C; Helicase conserved C-terminal domain
    pfam04158
    Location:508 → 560
    Sof1; Sof1-like domain
    cl21455
    Location:125 → 338
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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