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LOC8269812 calreticulin [ Ricinus communis (castor bean) ]

Gene ID: 8269812, updated on 25-Jan-2024

Summary

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Gene symbol
LOC8269812
Gene description
calreticulin
Locus tag
RCOM_1434770
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 10 NC_063265.1 (12860984..12864163, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994281.1 (1594998..1598190, complement)

Chromosome 10 - NC_063265.1Genomic Context describing neighboring genes Neighboring gene universal stress protein A-like protein Neighboring gene histidine kinase CKI1 Neighboring gene pyrophosphate-energized vacuolar membrane proton pump 1 Neighboring gene RNA pseudouridine synthase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and characterization of the calreticulin gene from Ricinus communis L. Coughlan SJ, et al. Plant Mol Biol, 1997 Aug. PMID 9290642

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calreticulin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001323723.1 → NP_001310652.1  calreticulin precursor

    Status: PROVISIONAL

    Source sequence(s)
    U74630
    UniProtKB/Swiss-Prot
    P93508
    UniProtKB/TrEMBL
    B9RFI2
    Conserved Domains (1) summary
    pfam00262
    Location:24 → 334
    Calreticulin; Calreticulin family

RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063265.1 Reference ASM1957865v1

    Range
    12860984..12864163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P93508.1 GenPept UniProtKB/Swiss-Prot:P93508

Gene LinkOut

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Molecular Biology Databases
Research Materials