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MICPUN_57322 COMPASS/Set1C complex protein [ Micromonas commoda ]

Gene ID: 8241886, updated on 16-Nov-2023

Summary

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Gene symbol
MICPUN_57322
Gene description
COMPASS/Set1C complex protein
Locus tag
MICPUN_57322
Gene type
protein coding
RNA name
COMPASS/Set1C complex protein
RefSeq status
PROVISIONAL
Organism
Micromonas commoda (strain: RCC299)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_013040.1 (1438869..1440332)

Chromosome 3 - NC_013040.1Genomic Context describing neighboring genes Neighboring gene glycosyltransferase family 5 protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013040.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Worden AZ, et al. Science, 2009 Apr 10. PMID 19359590

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
COMPASS/Set1C complex protein
XP_002500695.1
  • Predicted homolog of Saccharomyces cerevisiae SWD2, a subunit of the COMPASS (Set1C) complex ChromDB ID: SWDC20101

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013040.1 Reference assembly

    Range
    1438869..1440332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002500649.1 → XP_002500695.1  COMPASS/Set1C complex protein [Micromonas commoda]

    See identical proteins and their annotated locations for XP_002500695.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C1E2P8
    Conserved Domains (3) summary
    COG2319
    Location:2 → 338
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:8 → 351
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:19 → 56
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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