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CHAF1B chromatin assembly factor 1 subunit B [ Homo sapiens (human) ]

Gene ID: 8208, updated on 23-Nov-2021

Summary

Official Symbol
CHAF1Bprovided by HGNC
Official Full Name
chromatin assembly factor 1 subunit Bprovided by HGNC
Primary source
HGNC:HGNC:1911
See related
Ensembl:ENSG00000159259 MIM:601245
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CAF1; MPP7; CAF-1; CAF1A; CAF1P60; CAF-IP60; MPHOSPH7
Summary
Chromatin assembly factor I (CAF-I) is required for the assembly of histone octamers onto newly-replicated DNA. CAF-I is composed of three protein subunits, p50, p60, and p150. The protein encoded by this gene corresponds to the p60 subunit and is required for chromatin assembly after replication. The encoded protein is differentially phosphorylated in a cell cycle-dependent manner. In addition, it is normally found in the nucleus except during mitosis, when it is released into the cytoplasm. This protein is a member of the WD-repeat HIR1 family and may also be involved in DNA repair. [provided by RefSeq, Jul 2008]
Expression
Broad expression in bone marrow (RPKM 2.7), testis (RPKM 2.6) and 25 other tissues See more
Orthologs
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Genomic context

See CHAF1B in Genome Data Viewer
Location:
21q22.12-q22.13
Exon count:
17
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (36380145..36419015)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (37757690..37791313)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ribosomal protein S26 pseudogene 1 Neighboring gene MORC family CW-type zinc finger 3 Neighboring gene ATP synthase membrane subunit f pseudogene 1 Neighboring gene CLDN14 antisense RNA 1 Neighboring gene claudin 14 Neighboring gene proteasome 26S subunit, non-ATPase 4 pseudogene 1 Neighboring gene uncharacterized LOC105369308

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Genome-wide association study of lung function phenotypes in a founder population.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables chromatin binding TAS
Traceable Author Statement
more info
PubMed 
enables histone binding NAS
Non-traceable Author Statement
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables unfolded protein binding TAS
Traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 
involved_in DNA replication-dependent chromatin assembly IDA
Inferred from Direct Assay
more info
PubMed 
involved_in cell cycle IEA
Inferred from Electronic Annotation
more info
 
involved_in chromatin assembly IDA
Inferred from Direct Assay
more info
PubMed 
involved_in nucleosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of CAF-1 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of CAF-1 complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in chromatin IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm NAS
Non-traceable Author Statement
more info
PubMed 
colocalizes_with cytosol HDA PubMed 
colocalizes_with nucleoplasm HDA PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus NAS
Non-traceable Author Statement
more info
PubMed 
part_of protein-containing complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
chromatin assembly factor 1 subunit B
Names
CAF-1 subunit B
CAF-I 60 kDa subunit
CAF-I p60
M-phase phosphoprotein 7
chromatin assembly factor I p60 subunit
human chromatin assembly factor-I p60 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_046962.1 RefSeqGene

    Range
    13335..44771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_005441.3NP_005432.1  chromatin assembly factor 1 subunit B

    See identical proteins and their annotated locations for NP_005432.1

    Status: REVIEWED

    Source sequence(s)
    AL711314, AP000694, BC001143, BC021218
    Consensus CDS
    CCDS13644.1
    UniProtKB/Swiss-Prot
    Q13112
    Related
    ENSP00000315700.4, ENST00000314103.6
    Conserved Domains (3) summary
    sd00039
    Location:1664
    7WD40; WD40 repeat [structural motif]
    pfam15512
    Location:381555
    CAF-1_p60_C; Chromatin assembly factor complex 1 subunit p60, C-terminal
    cl29593
    Location:13251
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    36380145..36419015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017028477.1XP_016883966.1  chromatin assembly factor 1 subunit B isoform X1

    UniProtKB/Swiss-Prot
    Q13112
    Conserved Domains (3) summary
    sd00039
    Location:1664
    7WD40; WD40 repeat [structural motif]
    pfam15512
    Location:381555
    CAF-1_p60_C; Chromatin assembly factor complex 1 subunit p60, C-terminal
    cl29593
    Location:13251
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  2. XM_017028478.1XP_016883967.1  chromatin assembly factor 1 subunit B isoform X1

    UniProtKB/Swiss-Prot
    Q13112
    Conserved Domains (3) summary
    sd00039
    Location:1664
    7WD40; WD40 repeat [structural motif]
    pfam15512
    Location:381555
    CAF-1_p60_C; Chromatin assembly factor complex 1 subunit p60, C-terminal
    cl29593
    Location:13251
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  3. XM_011529755.2XP_011528057.1  chromatin assembly factor 1 subunit B isoform X2

    Conserved Domains (4) summary
    PHA02669
    Location:192354
    PHA02669; hypothetical protein; Provisional
    pfam15512
    Location:194368
    CAF-1_p60_C; Chromatin assembly factor complex 1 subunit p60, C-terminal
    sd00039
    Location:162204
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:131193
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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