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PAS_chr4_0279 Essential tripartite DNA replication factor with single-stranded DNA-dependent ATPase [ Komagataella phaffii GS115 ]

Gene ID: 8200948, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0279
Gene description
Essential tripartite DNA replication factor with single-stranded DNA-dependent ATPase
Locus tag
PAS_chr4_0279
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_012966.1 (559692..563932)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Protein that interacts with Sin3p in a two-hybrid assay Neighboring gene Protein involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis Neighboring gene Putative methylthio-ribulose-1-phosphate dehydratase Neighboring gene Hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-flap endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in replication fork reversal IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Essential tripartite DNA replication factor with single-stranded DNA-dependent ATPase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    559692..563932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002493647.1 → XP_002493692.1  Essential tripartite DNA replication factor with single-stranded DNA-dependent ATPase [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002493692.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R7D8, F2QZQ0
    Conserved Domains (5) summary
    pfam08696
    Location:391 → 591
    Dna2; DNA replication factor Dna2
    pfam13086
    Location:933 → 1104
    AAA_11; AAA domain
    pfam13087
    Location:1111 → 1325
    AAA_12; AAA domain
    cl00641
    Location:540 → 695
    Cas4_I-A_I-B_I-C_I-D_II-B; CRISPR/Cas system-associated protein Cas4
    cl21455
    Location:932 → 1127
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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