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Gpank1 G patch domain and ankyrin repeats 1 [ Mus musculus (house mouse) ]

Gene ID: 81845, updated on 30-Apr-2024

Summary

Official Symbol
Gpank1provided by MGI
Official Full Name
G patch domain and ankyrin repeats 1provided by MGI
Primary source
MGI:MGI:2148975
See related
Ensembl:ENSMUSG00000092417 AllianceGenome:MGI:2148975
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
G5; Bat4; Bat-4; D17H6S54E
Summary
Predicted to enable nucleic acid binding activity. Is expressed in blastocyst; central nervous system; gut; male reproductive gland or organ; and sensory organ. Orthologous to human GPANK1 (G-patch domain and ankyrin repeats 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 21.0), spleen adult (RPKM 7.3) and 28 other tissues See more
Orthologs
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Genomic context

See Gpank1 in Genome Data Viewer
Location:
17 B1; 17 18.59 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (35340472..35343791)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (35121448..35124815)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 6 family member G5C Neighboring gene lymphocyte antigen 6 family member G5B Neighboring gene casein kinase 2, beta polypeptide Neighboring gene predicted gene 20522 Neighboring gene DNA segment, Chr 17, human D6S53E Neighboring gene apolipoprotein M

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
G patch domain and ankyrin repeat-containing protein 1
Names
G patch domain and ankyrin repeats-containing protein 1
HLA-B associated transcript 4
protein BAT4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128597.2NP_001122069.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001122069.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has a distinct 5' UTR and lacks a segment of the 5' coding region, compared to variant 1. The encoded protein (isoform 2) has a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    CR974444
    Consensus CDS
    CCDS50084.1
    UniProtKB/TrEMBL
    Q6PES3
    Related
    ENSMUSP00000133240.3, ENSMUST00000165306.3
    Conserved Domains (3) summary
    sd00045
    Location:99131
    ANK; ANK repeat [structural motif]
    pfam01585
    Location:248290
    G-patch; G-patch domain
    pfam12796
    Location:99186
    Ank_2; Ankyrin repeats (3 copies)
  2. NM_001410200.1NP_001397129.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR974444
    UniProtKB/TrEMBL
    Q6PES3
  3. NM_001410201.1NP_001397130.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR974444
    UniProtKB/TrEMBL
    Q6PES3
  4. NM_001410202.1NP_001397131.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR974444
    UniProtKB/TrEMBL
    Q6PES3
  5. NM_001410203.1NP_001397132.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR974444
    UniProtKB/TrEMBL
    Q6PES3
  6. NM_001410204.1NP_001397133.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR974444
    UniProtKB/TrEMBL
    Q6PES3
  7. NM_032460.2NP_115849.2  G patch domain and ankyrin repeat-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_115849.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    BC120637, BY606764
    Consensus CDS
    CCDS28685.1
    UniProtKB/Swiss-Prot
    Q0VBG8, Q61858, Q9R065
    Related
    ENSMUSP00000056646.9, ENSMUST00000052167.9
    Conserved Domains (3) summary
    sd00045
    Location:122154
    ANK; ANK repeat [structural motif]
    pfam01585
    Location:271313
    G-patch; G-patch domain
    pfam12796
    Location:122209
    Ank_2; Ankyrin repeats (3 copies)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    35340472..35343791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006525182.4XP_006525245.1  G patch domain and ankyrin repeat-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006525245.1

    UniProtKB/TrEMBL
    Q6PES3
    Conserved Domains (3) summary
    sd00045
    Location:99131
    ANK; ANK repeat [structural motif]
    pfam01585
    Location:248290
    G-patch; G-patch domain
    pfam12796
    Location:99186
    Ank_2; Ankyrin repeats (3 copies)
  2. XM_030250157.1XP_030106017.1  G patch domain and ankyrin repeat-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q0VBG8, Q61858, Q9R065
    Conserved Domains (3) summary
    sd00045
    Location:122154
    ANK; ANK repeat [structural motif]
    pfam01585
    Location:271313
    G-patch; G-patch domain
    pfam12796
    Location:122209
    Ank_2; Ankyrin repeats (3 copies)
  3. XM_006525184.1XP_006525247.1  G patch domain and ankyrin repeat-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006525247.1

    UniProtKB/TrEMBL
    Q6PES3
    Conserved Domains (3) summary
    sd00045
    Location:99131
    ANK; ANK repeat [structural motif]
    pfam01585
    Location:248290
    G-patch; G-patch domain
    pfam12796
    Location:99186
    Ank_2; Ankyrin repeats (3 copies)