U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

KHDC1 KH domain containing 1 [ Homo sapiens (human) ]

Gene ID: 80759, updated on 2-Nov-2024

Summary

Official Symbol
KHDC1provided by HGNC
Official Full Name
KH domain containing 1provided by HGNC
Primary source
HGNC:HGNC:21366
See related
Ensembl:ENSG00000135314 MIM:611688; AllianceGenome:HGNC:21366
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NDG1; C6orf147; C6orf148; bA257K9.4; Em:AC019205.8
Summary
Predicted to enable identical protein binding activity and poly(U) RNA binding activity. Predicted to be located in membrane. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in brain (RPKM 1.7), thyroid (RPKM 1.1) and 23 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See KHDC1 in Genome Data Viewer
Location:
6q13
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (73241314..73310378, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (74417977..74487018, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (73951037..74020101, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene KH domain containing 1 pseudogene 1 Neighboring gene KHDC1-KHDC1L Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:73933575-73934774 Neighboring gene KH domain containing 1 like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17332 Neighboring gene KHDC1 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:73978297-73978873 Neighboring gene chromosome 6 open reading frame 147 Neighboring gene ribosomal protein SA pseudogene 41 Neighboring gene EIF3E pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:74017111-74017738 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24741 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24742 Neighboring gene syndecan binding protein 2 pseudogene 1 Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough LOC122539213

Readthrough gene: LOC122539213, Included gene: C6orf147, Included gene: KHDC1L

Clone Names

  • FLJ33665, MGC10818

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
KH homology domain-containing protein 1
Names
KH homology domain containing 1
Putative KHDC1-like protein

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001251874.4NP_001238803.2  KH homology domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AC019205, AL365232
  2. NM_001395215.3NP_001382144.2  KH homology domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AC019205, AL365232
    Consensus CDS
    CCDS59027.1
  3. NM_001395216.1NP_001382145.1  KH homology domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AC019205, AL365232
    Consensus CDS
    CCDS43480.1
    Conserved Domains (1) summary
    cd12795
    Location:1108
    FILIA_N_like; FILIA-N KH-like domain
  4. NM_030568.5NP_085045.3  KH homology domain-containing protein 1

    See identical proteins and their annotated locations for NP_085045.3

    Status: VALIDATED

    Source sequence(s)
    AL365232, BC022080, DA059235, DB473653
    Consensus CDS
    CCDS43480.1
    UniProtKB/Swiss-Prot
    Q4VXA5
    Related
    ENSP00000257765.5, ENST00000257765.10
    Conserved Domains (1) summary
    cd12795
    Location:1108
    FILIA_N_like; FILIA-N KH-like domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    73241314..73310378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    74417977..74487018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)