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KHDC1 KH domain containing 1 [ Homo sapiens (human) ]

Gene ID: 80759, updated on 26-Oct-2022

Summary

Official Symbol
KHDC1provided by HGNC
Official Full Name
KH domain containing 1provided by HGNC
Primary source
HGNC:HGNC:21366
See related
Ensembl:ENSG00000135314 MIM:611688; AllianceGenome:HGNC:21366
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NDG1; C6orf147; C6orf148; bA257K9.4; Em:AC019205.8
Summary
Predicted to enable identical protein binding activity and poly(U) RNA binding activity. Predicted to be involved in activation of cysteine-type endopeptidase activity involved in apoptotic process. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in brain (RPKM 1.7), thyroid (RPKM 1.1) and 23 other tissues See more
Orthologs
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Genomic context

See KHDC1 in Genome Data Viewer
Location:
6q13
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (73241314..73310378, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (74417977..74487018, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (73951037..74020101, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene KH domain containing 1 pseudogene 1 Neighboring gene KHDC1-KHDC1L Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:73933575-73934774 Neighboring gene KH domain containing 1 like Neighboring gene RPSAP41-EIF3EP1 Neighboring gene ribosomal protein SA pseudogene 41 Neighboring gene EIF3E pseudogene 1 Neighboring gene syndecan binding protein 2 pseudogene 1 Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough LOC122539213

Readthrough gene: LOC122539213, Included gene: C6orf147, Included gene: KHDC1L

Homology

Clone Names

  • FLJ33665, MGC10818

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in activation of cysteine-type endopeptidase activity involved in apoptotic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
KH homology domain-containing protein 1
Names
KH homology domain containing 1
Putative KHDC1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001251874.4NP_001238803.2  KH homology domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AC019205, AL365232
    Related
    ENSP00000359411.3, ENST00000370384.7
  2. NM_001395215.3NP_001382144.2  KH homology domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AC019205, AL365232
    Consensus CDS
    CCDS59027.1
  3. NM_001395216.1NP_001382145.1  KH homology domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AC019205, AL365232
    Consensus CDS
    CCDS43480.1
    Conserved Domains (1) summary
    cd12795
    Location:1108
    FILIA_N_like; FILIA-N KH-like domain
  4. NM_030568.5NP_085045.3  KH homology domain-containing protein 1

    See identical proteins and their annotated locations for NP_085045.3

    Status: VALIDATED

    Source sequence(s)
    AL365232, BC022080, DA059235, DB473653
    Consensus CDS
    CCDS43480.1
    UniProtKB/Swiss-Prot
    Q4VXA5
    Related
    ENSP00000257765.5, ENST00000257765.10
    Conserved Domains (1) summary
    cd12795
    Location:1108
    FILIA_N_like; FILIA-N KH-like domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    73241314..73310378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    74417977..74487018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)