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ASMTL-AS1 ASMTL antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 80161, updated on 31-Jul-2022

Summary

Official Symbol
ASMTL-AS1provided by HGNC
Official Full Name
ASMTL antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:25811
See related
AllianceGenome:HGNC:25811
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ASMTLAS; CXYorf2; ASMTL-AS; NCRNA00105
Summary
This gene serves as the antisense to the acetylserotonin O-methyltransferase-like gene. Multiple non-coding transcript variants have been found for this gene. [provided by RefSeq, Oct 2011]
Expression
Ubiquitous expression in spleen (RPKM 4.1), fat (RPKM 3.4) and 25 other tissues See more
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Genomic context

See ASMTL-AS1 in Genome Data Viewer
Location:
X;Y
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (1400531..1415421)
110 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (1400531..1415421)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (1244177..1257037)
110 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (1264439..1277822)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (1519424..1534314)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (1469424..1484314)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene solute carrier family 25 member 6 Neighboring gene long intergenic non-protein coding RNA 106 Neighboring gene acetylserotonin O-methyltransferase like Neighboring gene P2Y receptor family member 8 Neighboring gene A-kinase anchoring protein 17A Neighboring gene acetylserotonin O-methyltransferase

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373102 Neighboring gene solute carrier family 25 member 6 Neighboring gene long intergenic non-protein coding RNA 106 Neighboring gene acetylserotonin O-methyltransferase like Neighboring gene P2Y receptor family member 8 Neighboring gene A-kinase anchoring protein 17A Neighboring gene acetylserotonin O-methyltransferase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • ASMTL antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ13330

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_030331.1 RefSeqGene

    Range
    5001..19891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_026710.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' splice pattern, compared to variant 1.
    Source sequence(s)
    AL683870
  2. NR_026711.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL683870

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    1400531..1415421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    1400531..1415421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    1244177..1257037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    1264439..1277822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_025091.2: Suppressed sequence

    Description
    NM_025091.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.