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CCDC82 coiled-coil domain containing 82 [ Homo sapiens (human) ]

Gene ID: 79780, updated on 15-Apr-2019

Summary

Official Symbol
CCDC82provided by HGNC
Official Full Name
coiled-coil domain containing 82provided by HGNC
Primary source
HGNC:HGNC:26282
See related
Ensembl:ENSG00000149231
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSPC048
Expression
Ubiquitous expression in testis (RPKM 4.8), brain (RPKM 4.4) and 25 other tissues See more
Orthologs

Genomic context

See CCDC82 in Genome Data Viewer
Location:
11q21
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 11 NC_000011.10 (96352765..96389924, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (96085929..96123083, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene mastermind like transcriptional coactivator 2 Neighboring gene HNF4 motif-containing MPRA enhancer 300 Neighboring gene microRNA 1260b Neighboring gene JRK like Neighboring gene JRKL antisense RNA 1 Neighboring gene RNA, 5S ribosomal pseudogene 346

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ23518

General protein information

Preferred Names
coiled-coil domain-containing protein 82

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001318736.1NP_001305665.1  coiled-coil domain-containing protein 82 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AF245436, AK074306, AP000848, BP219605, BU742709
    Consensus CDS
    CCDS8307.1
    UniProtKB/Swiss-Prot
    Q8N4S0
    UniProtKB/TrEMBL
    A0A024R3B3
    Related
    ENSP00000495485.1, ENST00000645500.1
    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)
  2. NM_001318737.2NP_001305666.1  coiled-coil domain-containing protein 82 isoform b

    Status: VALIDATED

    Source sequence(s)
    AP003781, BC018663, BP219605
    Consensus CDS
    CCDS86241.1
    UniProtKB/Swiss-Prot
    Q8N4S0
    Related
    ENSP00000495640.1, ENST00000530106.2
    Conserved Domains (1) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
  3. NM_001363594.1NP_001350523.1  coiled-coil domain-containing protein 82 isoform c

    Status: VALIDATED

    Source sequence(s)
    AP000848, AP003781
    Consensus CDS
    CCDS86243.1
    Conserved Domains (2) summary
    pfam13846
    Location:98213
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:274426
    DUF4211; Domain of unknown function (DUF4211)
  4. NM_024725.4NP_079001.2  coiled-coil domain-containing protein 82 isoform a

    See identical proteins and their annotated locations for NP_079001.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AF245436, BM678039, BU742709, DA801410
    Consensus CDS
    CCDS8307.1
    UniProtKB/Swiss-Prot
    Q8N4S0
    UniProtKB/TrEMBL
    A0A024R3B3
    Related
    ENSP00000496393.1, ENST00000646818.2
    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p12 Primary Assembly

    Range
    96352765..96389924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017018310.1XP_016873799.1  coiled-coil domain-containing protein 82 isoform X2

    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)
  2. XM_005274292.3XP_005274349.1  coiled-coil domain-containing protein 82 isoform X1

    See identical proteins and their annotated locations for XP_005274349.1

    UniProtKB/Swiss-Prot
    Q8N4S0
    UniProtKB/TrEMBL
    A0A024R3B3
    Related
    ENSP00000397156.2, ENST00000423339.2
    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)
  3. XM_011542988.3XP_011541290.1  coiled-coil domain-containing protein 82 isoform X1

    See identical proteins and their annotated locations for XP_011541290.1

    UniProtKB/Swiss-Prot
    Q8N4S0
    UniProtKB/TrEMBL
    A0A024R3B3
    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)
  4. XM_006718911.4XP_006718974.1  coiled-coil domain-containing protein 82 isoform X3

    Related
    ENSP00000498266.1, ENST00000652261.1
    Conserved Domains (2) summary
    pfam13846
    Location:98213
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:274426
    DUF4211; Domain of unknown function (DUF4211)
  5. XM_024448693.1XP_024304461.1  coiled-coil domain-containing protein 82 isoform X2

    Related
    ENSP00000495913.1, ENST00000643839.1
    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)
  6. XM_011542987.3XP_011541289.1  coiled-coil domain-containing protein 82 isoform X1

    See identical proteins and their annotated locations for XP_011541289.1

    UniProtKB/Swiss-Prot
    Q8N4S0
    UniProtKB/TrEMBL
    A0A024R3B3
    Related
    ENSP00000494629.1, ENST00000645366.1
    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)
  7. XM_024448691.1XP_024304459.1  coiled-coil domain-containing protein 82 isoform X1

    Related
    ENSP00000495081.1, ENST00000644686.1
    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)
  8. XM_024448694.1XP_024304462.1  coiled-coil domain-containing protein 82 isoform X2

    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)
  9. XM_024448692.1XP_024304460.1  coiled-coil domain-containing protein 82 isoform X1

    Related
    ENSP00000495063.1, ENST00000645439.1
    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)
  10. XM_024448690.1XP_024304458.1  coiled-coil domain-containing protein 82 isoform X1

    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)
  11. XM_017018312.2XP_016873801.1  coiled-coil domain-containing protein 82 isoform X3

    Conserved Domains (2) summary
    pfam13846
    Location:98213
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:274426
    DUF4211; Domain of unknown function (DUF4211)
  12. XM_017018307.1XP_016873796.1  coiled-coil domain-containing protein 82 isoform X1

    UniProtKB/Swiss-Prot
    Q8N4S0
    UniProtKB/TrEMBL
    A0A024R3B3
    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)
  13. XM_011542984.3XP_011541286.1  coiled-coil domain-containing protein 82 isoform X1

    See identical proteins and their annotated locations for XP_011541286.1

    UniProtKB/Swiss-Prot
    Q8N4S0
    UniProtKB/TrEMBL
    A0A024R3B3
    Related
    ENSP00000494657.1, ENST00000646638.1
    Conserved Domains (2) summary
    pfam13846
    Location:98236
    DUF4196; Domain of unknown function (DUF4196)
    pfam13926
    Location:297449
    DUF4211; Domain of unknown function (DUF4211)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_014148.1: Suppressed sequence

    Description
    NM_014148.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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