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ZC2HC1C zinc finger C2HC-type containing 1C [ Homo sapiens (human) ]

Gene ID: 79696, updated on 23-Nov-2021

Summary

Official Symbol
ZC2HC1Cprovided by HGNC
Official Full Name
zinc finger C2HC-type containing 1Cprovided by HGNC
Primary source
HGNC:HGNC:20354
See related
Ensembl:ENSG00000119703
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM164C; C14orf140
Expression
Biased expression in testis (RPKM 18.3), thyroid (RPKM 2.1) and 2 other tissues See more
Orthologs
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Genomic context

See ZC2HC1C in Genome Data Viewer
Location:
14q24.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (75069628..75079988)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (75536344..75546691)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 689, pseudogene Neighboring gene mutL homolog 3 Neighboring gene acylphosphatase 1 Neighboring gene NIMA related kinase 9 Neighboring gene HIF1AP pseudogene 1 Neighboring gene transmembrane p24 trafficking protein 10

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ23093

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
zinc finger C2HC domain-containing protein 1C
Names
family with sequence similarity 164, member C
protein FAM164C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001042430.3NP_001035895.1  zinc finger C2HC domain-containing protein 1C isoform b

    See identical proteins and their annotated locations for NP_001035895.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (b) has a shorter C-terminus than isoform a.
    Source sequence(s)
    AK026746, AK223359, AL049780, HY031397
    Consensus CDS
    CCDS45138.1
    UniProtKB/Swiss-Prot
    Q53FD0
    UniProtKB/TrEMBL
    A0A024R6E6
    Related
    ENSP00000390606.2, ENST00000439583.2
  2. NM_001330191.2NP_001317120.1  zinc finger C2HC domain-containing protein 1C isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (c) has a shorter C-terminus than isoform a.
    Source sequence(s)
    AL049780
    Consensus CDS
    CCDS81829.1
    UniProtKB/TrEMBL
    J3KMY6
    Related
    ENSP00000238686.8, ENST00000238686.8
  3. NM_024643.4NP_078919.2  zinc finger C2HC domain-containing protein 1C isoform a

    See identical proteins and their annotated locations for NP_078919.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
    Source sequence(s)
    AK026746, AK223359, AL049780, HY031397
    Consensus CDS
    CCDS41972.1
    UniProtKB/Swiss-Prot
    Q53FD0
    Related
    ENSP00000435550.1, ENST00000524913.3
    Conserved Domains (1) summary
    pfam13913
    Location:387411
    zf-C2HC_2; zinc-finger of a C2HC-type

RNA

  1. NR_110315.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an internal exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
    Source sequence(s)
    AK026746, AK223359, AL049780, BX110341, HY031397

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    75069628..75079988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011537156.2XP_011535458.1  zinc finger C2HC domain-containing protein 1C isoform X1

    See identical proteins and their annotated locations for XP_011535458.1

    UniProtKB/Swiss-Prot
    Q53FD0
    Conserved Domains (1) summary
    pfam13913
    Location:387411
    zf-C2HC_2; zinc-finger of a C2HC-type
  2. XM_017021643.2XP_016877132.1  zinc finger C2HC domain-containing protein 1C isoform X3

  3. XM_005268063.4XP_005268120.1  zinc finger C2HC domain-containing protein 1C isoform X4

  4. XM_017021645.1XP_016877134.1  zinc finger C2HC domain-containing protein 1C isoform X5

    UniProtKB/Swiss-Prot
    Q53FD0
    UniProtKB/TrEMBL
    A0A024R6E6
    Related
    ENSP00000451195.2, ENST00000554763.2
  5. XM_011537157.3XP_011535459.1  zinc finger C2HC domain-containing protein 1C isoform X2

    Conserved Domains (1) summary
    pfam13913
    Location:387411
    zf-C2HC_2; zinc-finger of a C2HC-type
  6. XM_005268062.3XP_005268119.1  zinc finger C2HC domain-containing protein 1C isoform X1

    See identical proteins and their annotated locations for XP_005268119.1

    UniProtKB/Swiss-Prot
    Q53FD0
    Related
    ENSP00000501056.1, ENST00000674086.1
    Conserved Domains (1) summary
    pfam13913
    Location:387411
    zf-C2HC_2; zinc-finger of a C2HC-type
  7. XM_024449710.1XP_024305478.1  zinc finger C2HC domain-containing protein 1C isoform X4

    Related
    ENSP00000434733.2, ENST00000532198.2
  8. XM_024449711.1XP_024305479.1  zinc finger C2HC domain-containing protein 1C isoform X5

    Related
    ENSP00000435684.2, ENST00000525046.2
  9. XM_017021644.1XP_016877133.1  zinc finger C2HC domain-containing protein 1C isoform X5

    UniProtKB/Swiss-Prot
    Q53FD0
    UniProtKB/TrEMBL
    A0A024R6E6
    Related
    ENSP00000437160.2, ENST00000526130.2
  10. XM_011537155.2XP_011535457.1  zinc finger C2HC domain-containing protein 1C isoform X1

    See identical proteins and their annotated locations for XP_011535457.1

    UniProtKB/Swiss-Prot
    Q53FD0
    Conserved Domains (1) summary
    pfam13913
    Location:387411
    zf-C2HC_2; zinc-finger of a C2HC-type
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