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RTL10 retrotransposon Gag like 10 [ Homo sapiens (human) ]

Gene ID: 79680, updated on 1-Jun-2020

Summary

Official Symbol
RTL10provided by HGNC
Official Full Name
retrotransposon Gag like 10provided by HGNC
Primary source
HGNC:HGNC:26112
See related
Ensembl:ENSG00000215012
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BOP; C22orf29
Expression
Ubiquitous expression in skin (RPKM 6.6), brain (RPKM 5.5) and 25 other tissues See more
Orthologs

Genomic context

See RTL10 in Genome Data Viewer
Location:
22q11.21
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (19846146..19854874, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (19833661..19842371, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs515 Neighboring gene T-box transcription factor 1 Neighboring gene G protein subunit beta 1 like Neighboring gene ribosomal protein L7a pseudogene 70 Neighboring gene thioredoxin reductase 2 Neighboring gene ribosomal protein L8 pseudogene 5 Neighboring gene Sharpr-MPRA regulatory region 10527 Neighboring gene catechol-O-methyltransferase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ21125

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
mitochondrial outer membrane permeabilization IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of mitochondrial membrane potential IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein Bop
Names
BH3-only protein
retrotransposon Gag-like protein 10

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024627.6NP_078903.3  protein Bop

    See identical proteins and their annotated locations for NP_078903.3

    Status: VALIDATED

    Source sequence(s)
    AC000076, AK026924, BC011679, DA182195, DA757523
    Consensus CDS
    CCDS13769.1
    UniProtKB/Swiss-Prot
    Q7L3V2
    Related
    ENSP00000330596.4, ENST00000328554.9
    Conserved Domains (1) summary
    pfam16297
    Location:104178
    DUF4939; Domain of unknown function (DUF4939)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    19846146..19854874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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