U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ogfod2 2-oxoglutarate and iron-dependent oxygenase domain containing 2 [ Danio rerio (zebrafish) ]

Gene ID: 790923, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ogfod2provided by ZNC
Official Full Name
2-oxoglutarate and iron-dependent oxygenase domain containing 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-061215-54
See related
Ensembl:ENSDARG00000056211 AllianceGenome:ZFIN:ZDB-GENE-061215-54
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:158437; si:dkey-21k4.1
Summary
Predicted to enable 2-oxoglutarate-dependent dioxygenase activity; L-ascorbic acid binding activity; and iron ion binding activity. Orthologous to human OGFOD2 (2-oxoglutarate and iron dependent oxygenase domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (28041963..28047712)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (27441779..27452913)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 9 Neighboring gene zgc:113436 Neighboring gene solute carrier family 4 member 5a Neighboring gene zgc:110329 Neighboring gene tachykinin receptor 1a

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions. Thyme SB, et al. Cell, 2019 Apr 4. PMID 30929901, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables 2-oxoglutarate-dependent dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2
NP_001307103.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001320174.1 → NP_001307103.1  2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2

    Status: VALIDATED

    Source sequence(s)
    AL929297
    UniProtKB/Swiss-Prot
    A1A5Z6, A3KGZ2
    Related
    ENSDARP00000116458.1, ENSDART00000133641.2
    Conserved Domains (1) summary
    cl21496
    Location:140 → 300
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    28041963..28047712
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395236.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    281491..287240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001080069.1: Suppressed sequence

    Description
    NM_001080069.1: This RefSeq was removed because currently there is insufficient support for the transcript.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A3KGZ2.1 GenPept UniProtKB/Swiss-Prot:A3KGZ2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools