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C7orf25 chromosome 7 open reading frame 25 [ Homo sapiens (human) ]

Gene ID: 79020, updated on 10-Oct-2023

Summary

Official Symbol
C7orf25provided by HGNC
Official Full Name
chromosome 7 open reading frame 25provided by HGNC
Primary source
HGNC:HGNC:21703
See related
Ensembl:ENSG00000136197 AllianceGenome:HGNC:21703
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 4.7), kidney (RPKM 3.7) and 25 other tissues See more
Orthologs
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Genomic context

See C7orf25 in Genome Data Viewer
Location:
7p14.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (42909273..42912070, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (43067417..43070214, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (42948872..42951669, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr7:42845047-42845574 Neighboring gene t-complex 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18120 Neighboring gene uncharacterized LOC107986735 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:42910171-42910751 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:42915433-42916364 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:42917594-42918115 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:42923371-42924173 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:42927975-42928518 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:42950498-42951195 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:42951196-42951892 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25904 Neighboring gene serine-threonine kinase receptor-associated protein-like Neighboring gene proteasome 20S subunit alpha 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25905 Neighboring gene mitochondrial ribosomal protein L32

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099858.2NP_001093328.2  UPF0415 protein C7orf25

    Status: VALIDATED

    Source sequence(s)
    AC010132
    Consensus CDS
    CCDS5466.1
    UniProtKB/Swiss-Prot
    A4D1V2, J3KR36, Q9BPX7, Q9H779
    UniProtKB/TrEMBL
    B4DQM3
    Related
    ENSP00000343364.4, ENST00000350427.5
    Conserved Domains (2) summary
    pfam07000
    Location:248409
    DUF1308; Protein of unknown function (DUF1308)
    pfam18474
    Location:1218
    DUF5614; Family of unknown function (DUF5614)
  2. NM_001363436.1NP_001350365.1  UPF0415 protein C7orf25

    Status: VALIDATED

    Source sequence(s)
    AK024820, BX401140, DB483522, DC303669
    Consensus CDS
    CCDS5466.1
    UniProtKB/Swiss-Prot
    A4D1V2, J3KR36, Q9BPX7, Q9H779
    UniProtKB/TrEMBL
    B4DQM3
    Related
    ENSP00000396597.1, ENST00000438029.1
    Conserved Domains (2) summary
    pfam07000
    Location:248409
    DUF1308; Protein of unknown function (DUF1308)
    pfam18474
    Location:1218
    DUF5614; Family of unknown function (DUF5614)
  3. NM_024054.3NP_076959.2  UPF0415 protein C7orf25

    See identical proteins and their annotated locations for NP_076959.2

    Status: VALIDATED

    Source sequence(s)
    AK024820, BC000769, DC303669, DC366585
    Consensus CDS
    CCDS5466.1
    UniProtKB/Swiss-Prot
    A4D1V2, J3KR36, Q9BPX7, Q9H779
    UniProtKB/TrEMBL
    B4DQM3
    Conserved Domains (2) summary
    pfam07000
    Location:248409
    DUF1308; Protein of unknown function (DUF1308)
    pfam18474
    Location:1218
    DUF5614; Family of unknown function (DUF5614)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    42909273..42912070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047420827.1XP_047276783.1  UPF0415 protein C7orf25 isoform X1

    UniProtKB/TrEMBL
    B4DQM3

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    43067417..43070214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054358989.1XP_054214964.1  UPF0415 protein C7orf25 isoform X1

    UniProtKB/TrEMBL
    B4DQM3