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C7orf25 chromosome 7 open reading frame 25 [ Homo sapiens (human) ]

Gene ID: 79020, updated on 7-Jun-2020

Summary

Official Symbol
C7orf25provided by HGNC
Official Full Name
chromosome 7 open reading frame 25provided by HGNC
Primary source
HGNC:HGNC:21703
See related
Ensembl:ENSG00000136197
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 4.7), kidney (RPKM 3.7) and 25 other tissues See more
Orthologs

Genomic context

See C7orf25 in Genome Data Viewer
Location:
7p14.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (42909273..42914356, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (42948223..42951689, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene t-complex 1 pseudogene 1 Neighboring gene uncharacterized LOC107986735 Neighboring gene serine-threonine kinase receptor-associated protein pseudogene Neighboring gene proteasome 20S subunit alpha 2 Neighboring gene mitochondrial ribosomal protein L32

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC2821, FLJ21167

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099858.1NP_001093328.1  UPF0415 protein C7orf25 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (a).
    Source sequence(s)
    AK024820, DC303669, DC366585
    Consensus CDS
    CCDS47576.1
    UniProtKB/Swiss-Prot
    Q9BPX7
    Related
    ENSP00000413029.2, ENST00000447342.5
    Conserved Domains (1) summary
    pfam07000
    Location:96459
    DUF1308; Protein of unknown function (DUF1308)
  2. NM_001363436.1NP_001350365.1  UPF0415 protein C7orf25 isoform b

    Status: VALIDATED

    Source sequence(s)
    AK024820, BX401140, DB483522, DC303669
    Consensus CDS
    CCDS5466.1
    Related
    ENSP00000396597.1, ENST00000438029.1
    Conserved Domains (1) summary
    pfam07000
    Location:38401
    DUF1308; Protein of unknown function (DUF1308)
  3. NM_024054.3NP_076959.2  UPF0415 protein C7orf25 isoform b

    See identical proteins and their annotated locations for NP_076959.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region and uses a downstream start codon, compared to variant 1. Isoform b has a shorter N-terminus, compared to isoform a. Variants 2 and 3 encode the same isoform (b).
    Source sequence(s)
    AK024820, BC000769, DC303669, DC366585
    Consensus CDS
    CCDS5466.1
    UniProtKB/Swiss-Prot
    Q9BPX7
    Related
    ENSP00000343364.4, ENST00000350427.4
    Conserved Domains (1) summary
    pfam07000
    Location:38401
    DUF1308; Protein of unknown function (DUF1308)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    42909273..42914356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017012597.2XP_016868086.1  UPF0415 protein C7orf25 isoform X2

    UniProtKB/Swiss-Prot
    Q9BPX7
    Conserved Domains (1) summary
    pfam07000
    Location:38401
    DUF1308; Protein of unknown function (DUF1308)
  2. XM_017012596.1XP_016868085.1  UPF0415 protein C7orf25 isoform X1

    Conserved Domains (1) summary
    pfam07000
    Location:52415
    DUF1308; Protein of unknown function (DUF1308)
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