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YIPF2 Yip1 domain family member 2 [ Homo sapiens (human) ]

Gene ID: 78992, updated on 23-Nov-2021

Summary

Official Symbol
YIPF2provided by HGNC
Official Full Name
Yip1 domain family member 2provided by HGNC
Primary source
HGNC:HGNC:28476
See related
Ensembl:ENSG00000130733 MIM:617522
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FinGER2
Expression
Ubiquitous expression in testis (RPKM 22.9), placenta (RPKM 21.1) and 25 other tissues See more
Orthologs
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Genomic context

See YIPF2 in Genome Data Viewer
Location:
19p13.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (10922185..10928688, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (11032869..11039315, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene chromosome 19 open reading frame 38 Neighboring gene HIKESHI pseudogene 2 Neighboring gene transmembrane p24 trafficking protein 1 Neighboring gene coactivator associated arginine methyltransferase 1 Neighboring gene translocase of inner mitochondrial membrane 29 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 Neighboring gene RNA, 7SL, cytoplasmic 192, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC3262

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi medial cisterna IDA
Inferred from Direct Assay
more info
PubMed 
located_in Golgi trans cisterna IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 
located_in trans-Golgi network IDA
Inferred from Direct Assay
more info
PubMed 
located_in transport vesicle IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
protein YIPF2
Names
YIP1 family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001321439.2NP_001308368.1  protein YIPF2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC011442, BC000056, HY020827
    Consensus CDS
    CCDS12251.1
    UniProtKB/Swiss-Prot
    Q9BWQ6
    UniProtKB/TrEMBL
    A0A024R7E1
    Related
    ENSP00000466055.1, ENST00000586748.6
    Conserved Domains (1) summary
    pfam04893
    Location:87248
    Yip1; Yip1 domain
  2. NM_001321440.2NP_001308369.1  protein YIPF2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC011442, BE275116, BM554546
    Consensus CDS
    CCDS82293.1
    UniProtKB/TrEMBL
    K7ENM8
    Related
    ENSP00000467019.1, ENST00000590329.5
    Conserved Domains (1) summary
    pfam04893
    Location:122209
    Yip1; Yip1 domain
  3. NM_024029.5NP_076934.1  protein YIPF2 isoform 1

    See identical proteins and their annotated locations for NP_076934.1

    Status: VALIDATED

    Source sequence(s)
    AC011442, BC013014, BX327495
    Consensus CDS
    CCDS12251.1
    UniProtKB/Swiss-Prot
    Q9BWQ6
    UniProtKB/TrEMBL
    A0A024R7E1
    Related
    ENSP00000253031.1, ENST00000253031.6
    Conserved Domains (1) summary
    pfam04893
    Location:87248
    Yip1; Yip1 domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    10922185..10928688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024451699.1XP_024307467.1  protein YIPF2 isoform X3

    Conserved Domains (1) summary
    pfam04893
    Location:87248
    Yip1; Yip1 domain
  2. XM_024451696.1XP_024307464.1  protein YIPF2 isoform X1

  3. XM_011528270.2XP_011526572.1  protein YIPF2 isoform X3

    See identical proteins and their annotated locations for XP_011526572.1

    UniProtKB/Swiss-Prot
    Q9BWQ6
    UniProtKB/TrEMBL
    A0A024R7E1
    Conserved Domains (1) summary
    pfam04893
    Location:87248
    Yip1; Yip1 domain
  4. XM_024451695.1XP_024307463.1  protein YIPF2 isoform X1

  5. XM_024451697.1XP_024307465.1  protein YIPF2 isoform X1

  6. XM_024451700.1XP_024307468.1  protein YIPF2 isoform X4

    Conserved Domains (1) summary
    pfam04893
    Location:81219
    Yip1; Yip1 domain
  7. XM_011528271.2XP_011526573.1  protein YIPF2 isoform X4

    Conserved Domains (1) summary
    pfam04893
    Location:81219
    Yip1; Yip1 domain
  8. XM_024451698.1XP_024307466.1  protein YIPF2 isoform X2

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