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2500002B13Rik RIKEN cDNA 2500002B13 gene [ Mus musculus (house mouse) ]

Gene ID: 78353, updated on 18-Apr-2024

Summary

Official Symbol
2500002B13Rikprovided by MGI
Official Full Name
RIKEN cDNA 2500002B13 geneprovided by MGI
Primary source
MGI:MGI:1925603
See related
Ensembl:ENSMUSG00000096917 AllianceGenome:MGI:1925603
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in liver E14.5 (RPKM 2.0), liver E14 (RPKM 2.0) and 23 other tissues See more
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Genomic context

Location:
8 B2; 8 29.86 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (57940997..57963296)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (57487963..57510262)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_21527 Neighboring gene scrapie responsive gene 1 Neighboring gene STARR-positive B cell enhancer ABC_E1755 Neighboring gene STARR-seq mESC enhancer starr_21528 Neighboring gene sin3 associated polypeptide Neighboring gene STARR-seq mESC enhancer starr_21531 Neighboring gene STARR-seq mESC enhancer starr_21533 Neighboring gene predicted gene 6012 Neighboring gene high mobility group box 2 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 7 Neighboring gene predicted gene, 51574

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126553.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC130841, CV562999, DV645788
    Related
    ENSMUST00000240689.1
  2. NR_126555.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has a shorter 3' end than variant 1.
    Source sequence(s)
    CV562999
  3. NR_126556.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks multiple 5' exons, contains an alternate 5' terminal exon, and has a shorter 3' end, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AK019137, CV562999

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    57940997..57963296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)