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supt6h SPT6 homolog, histone chaperone [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 780122, updated on 17-Aug-2024

Summary

Official Symbol
supt6hprovided by Xenbase
Official Full Name
SPT6 homolog, histone chaperoneprovided by Xenbase
Primary source
Xenbase:XB-GENE-990369
See related
Ensembl:ENSXETG00000019265
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
spt6; emb-5; spt6h
Orthologs
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Genomic context

Location:
chromosome: 2
Exon count:
37
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (34412663..34444180, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (26826306..26858045, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene adenine phosphoribosyltransferase like Neighboring gene protein interacting with cyclin A1 Neighboring gene stromal cell derived factor 2 Neighboring gene bridge-like lipid transfer protein family member 2

Genomic regions, transcripts, and products

General protein information

Preferred Names
transcription elongation factor SPT6
Names
Spt6 gene product
suppressor of Ty 6 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    34412663..34444180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012957453.3XP_012812907.1  transcription elongation factor SPT6

    UniProtKB/TrEMBL
    A0A6I8Q980, A0A6I8SQJ9
    Related
    ENSXETP00000066120.1, ENSXETT00000103194.2
    Conserved Domains (2) summary
    COG2183
    Location:3661346
    Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
    pfam14633
    Location:12971507
    SH2_2; SH2 domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001016620.2: Suppressed sequence

    Description
    NM_001016620.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
  2. NM_001079197.1: Suppressed sequence

    Description
    NM_001079197.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from cow: SUPT6H (GeneID:538671).