zf(rbz) zinc finger protein [Ciona intestinalis (vase tunicate)] - Gene

Summary

Gene symbol: zf(rbz)
Gene description: zinc finger protein
See related: Ensembl:ENSCING00000020967
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Ciona intestinalis
Lineage: Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

Location:: chromosome: Un

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
104	current	KH (GCF_000224145.3)	Unplaced Scaffold	NW_004191521.1 (3600..20062, complement)

NW_004191521.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NW_004191521 Unplaced Scaffold Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables lipopolysaccharide binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in RNA processing	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: zinc finger protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001078414.1 → NP_001071882.1 zinc finger protein

See identical proteins and their annotated locations for NP_001071882.1

Status: PROVISIONAL

Source sequence(s)

AB210810

UniProtKB/TrEMBL

A0A1W2VS36, Q4H2G2

Related

ENSCINP00000031984, ENSCINT00000031885

Conserved Domains (3) summary

smart00547
Location:65 → 89

ZnF_RBZ; Zinc finger domain

sd00029
Location:13 → 32

zf-RanBP2; RanBP2-type Zn finger [structural motif]

pfam00641
Location:9 → 36

zf-RanBP; Zn-finger in Ran binding protein and others

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

NW_004191521.1 Reference KH Primary Assembly

Range

3600..20062 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_026840338.1 → XP_026696139.1 zinc finger protein isoform X1

UniProtKB/TrEMBL

A0A1W3JUM5, H2XQQ0

Conserved Domains (2) summary

smart00547
Location:11 → 33

ZnF_RBZ; Zinc finger domain

sd00029
Location:13 → 32

zf-RanBP2; RanBP2-type Zn finger [structural motif]