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ypdK putative membrane protein YpdK [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 7751622, updated on 19-Sep-2024

Summary

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Official Symbol
ypdK
Official Full Name
putative membrane protein YpdK
Primary source
ECOCYC:G0-10647
Locus tag
b4680
See related
ASAP:ABE-0285223
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4495
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Genomic context

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Sequence:
NC_000913.3 (2496921..2496992)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF2545 domain-containing protein YfdY Neighboring gene palmitoleoyl acyltransferase Neighboring gene glutamate--pyruvate aminotransferase AlaC Neighboring gene sensor histidine kinase PyrS

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global approaches for finding small RNA and small open reading frame functions. Wassarman KM, et al. J Bacteriol, 2010 Jan. PMID 19854892, Free PMC Article
  2. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
  3. Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies. Hemm MR, et al. J Bacteriol, 2010 Jan. PMID 19734316, Free PMC Article
  4. Membrane localization of small proteins in Escherichia coli. Fontaine F, et al. J Biol Chem, 2011 Sep 16. PMID 21778229, Free PMC Article
  5. Small membrane proteins found by comparative genomics and ribosome binding site models. Hemm MR, et al. Mol Microbiol, 2008 Dec. PMID 19121005, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
putative membrane protein YpdK

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2496921..2496992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_002791250.1 putative membrane protein YpdK [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for YP_002791250.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    C1P610
    Conserved Domains (1) summary
    NF033437
    Location:1 → 23
    YpdK; membrane protein YpdK
Nucleotide Protein
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