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Bcl7a B cell CLL/lymphoma 7A [ Mus musculus (house mouse) ]

Gene ID: 77045, updated on 9-May-2024

Summary

Official Symbol
Bcl7aprovided by MGI
Official Full Name
B cell CLL/lymphoma 7Aprovided by MGI
Primary source
MGI:MGI:1924295
See related
Ensembl:ENSMUSG00000029438 AllianceGenome:MGI:1924295
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4432415N06Rik
Summary
Is expressed in several structures, including central nervous system; foregut; sensory organ; tooth; and vibrissa. Orthologous to human BCL7A (BAF chromatin remodeling complex subunit BCL7A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E14 (RPKM 21.1), CNS E11.5 (RPKM 20.9) and 26 other tissues See more
Orthologs
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Genomic context

See Bcl7a in Genome Data Viewer
Location:
5 F; 5 62.92 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (123482511..123512146)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (123344448..123374083)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9262 Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 Neighboring gene ribosomal protein L35A, pseudogene 6 Neighboring gene cilia and flagella associated protein 251 Neighboring gene STARR-positive B cell enhancer ABC_E10350 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:123794689-123794872 Neighboring gene predicted gene 15860 Neighboring gene STARR-seq mESC enhancer starr_14319 Neighboring gene STARR-seq mESC enhancer starr_14320 Neighboring gene predicted gene, 23458 Neighboring gene STARR-positive B cell enhancer ABC_E2764 Neighboring gene STARR-positive B cell enhancer ABC_E8080 Neighboring gene MLX interacting protein Neighboring gene STARR-positive B cell enhancer ABC_E3618 Neighboring gene ribosomal protein L31, pseudogene 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
part_of GBAF complex NAS
Non-traceable Author Statement
more info
PubMed 
part_of SWI/SNF complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of SWI/SNF complex ISO
Inferred from Sequence Orthology
more info
 
part_of SWI/SNF complex NAS
Non-traceable Author Statement
more info
PubMed 
part_of chromatin NAS
Non-traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
B-cell CLL/lymphoma 7 protein family member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029850.3NP_084126.1  B-cell CLL/lymphoma 7 protein family member A

    See identical proteins and their annotated locations for NP_084126.1

    Status: VALIDATED

    Source sequence(s)
    AC113504, BC046777, BY271432
    Consensus CDS
    CCDS19661.1
    UniProtKB/Swiss-Prot
    Q8C361, Q8C8M8, Q8VD15, Q9CXE2
    Related
    ENSMUSP00000031391.3, ENSMUST00000031391.9
    Conserved Domains (1) summary
    pfam04714
    Location:450
    BCL_N; BCL7, N-terminal conserver region

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    123482511..123512146
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)