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Slitrk1 SLIT and NTRK-like family, member 1 [ Mus musculus (house mouse) ]

Gene ID: 76965, updated on 29-May-2018
Official Symbol
Slitrk1provided by MGI
Official Full Name
SLIT and NTRK-like family, member 1provided by MGI
Primary source
MGI:MGI:2679446
See related
Ensembl:ENSMUSG00000075478
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
3200001I04Rik
Orthologs
See Slitrk1 in Genome Data Viewer
Location:
14; 14 E3
Exon count:
1
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (108909988..108914239, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (109309205..109313456, complement)

Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene ribosomal protein L27A, pseudogene 2 Neighboring gene predicted gene, 30157 Neighboring gene predicted gene, 30216 Neighboring gene heterogeneous nuclear ribonucleoprotein D-like pseudogene

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
adult behavior IMP
Inferred from Mutant Phenotype
more info
PubMed 
axonogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
axonogenesis IDA
Inferred from Direct Assay
more info
PubMed 
homeostatic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
nervous system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of axonogenesis ISO
Inferred from Sequence Orthology
more info
 
positive regulation of synapse assembly IDA
Inferred from Direct Assay
more info
PubMed 
synapse assembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cell junction IEA
Inferred from Electronic Annotation
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
synapse IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
SLIT and NTRK-like protein 1
Names
slit and trk like gene 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199065.2NP_951020.1  SLIT and NTRK-like protein 1 precursor

    See identical proteins and their annotated locations for NP_951020.1

    Status: VALIDATED

    Source sequence(s)
    AK173296, BE956915, CO430912
    Consensus CDS
    CCDS27325.1
    UniProtKB/Swiss-Prot
    Q810C1
    UniProtKB/TrEMBL
    B2RXM1, Q69Z70
    Related
    ENSMUSP00000097897.2, ENSMUST00000100322.3
    Conserved Domains (3) summary
    sd00033
    Location:6283
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:425483
    LRR_8; Leucine rich repeat
    cl15307
    Location:212250
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

    Range
    108909988..108914239 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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