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5330411J11Rik RIKEN cDNA 5330411J11 gene [ Mus musculus (house mouse) ]

Gene ID: 76676, updated on 8-Feb-2024

Summary

Official Symbol
5330411J11Rikprovided by MGI
Official Full Name
RIKEN cDNA 5330411J11 geneprovided by MGI
Primary source
MGI:MGI:1923926
See related
Ensembl:ENSMUSG00000087455 AllianceGenome:MGI:1923926
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

See 5330411J11Rik in Genome Data Viewer
Location:
2 C1.1; 2 33.72 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (59212837..59217026, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (59382493..59386682, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 148 Neighboring gene predicted gene, 54155 Neighboring gene STARR-positive B cell enhancer mm9_chr2:58998596-58998897 Neighboring gene STARR-seq mESC enhancer starr_04563 Neighboring gene plakophilin 4 Neighboring gene STARR-seq mESC enhancer starr_04569 Neighboring gene STARR-seq mESC enhancer starr_04570 Neighboring gene STARR-seq mESC enhancer starr_04571 Neighboring gene STARR-seq mESC enhancer starr_04573 Neighboring gene predicted gene 13551 Neighboring gene lactate dehydrogenase A pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040510.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK017239, AL845283, BY384602
    Related
    ENSMUST00000137162.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    59212837..59217026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)