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5033430I15Rik RIKEN cDNA 5033430I15 gene [ Mus musculus (house mouse) ]

Gene ID: 76000, updated on 8-Feb-2024

Summary

Official Symbol
5033430I15Rikprovided by MGI
Official Full Name
RIKEN cDNA 5033430I15 geneprovided by MGI
Primary source
MGI:MGI:1923250
See related
Ensembl:ENSMUSG00000038152 AllianceGenome:MGI:1923250
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in CNS E18 (RPKM 2.2), kidney adult (RPKM 2.2) and 28 other tissues See more
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Genomic context

Location:
13 A5; 13 22.95 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (46118700..46119984)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (45965224..45966508)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_34395 Neighboring gene predicted gene, 34582 Neighboring gene guanosine monophosphate reductase Neighboring gene ataxin 1 Neighboring gene STARR-positive B cell enhancer mm9_chr13:45744500-45744801 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:45789016-45789125 Neighboring gene STARR-seq mESC enhancer starr_34397 Neighboring gene STARR-seq mESC enhancer starr_34398 Neighboring gene STARR-positive B cell enhancer mm9_chr13:45980000-45980300 Neighboring gene STARR-seq mESC enhancer starr_34399 Neighboring gene STARR-positive B cell enhancer mm9_chr13:46017736-46018037 Neighboring gene STARR-positive B cell enhancer mm9_chr13:46060268-46060569 Neighboring gene STARR-seq mESC enhancer starr_34400 Neighboring gene STARR-seq mESC enhancer starr_34402 Neighboring gene STARR-seq mESC enhancer starr_34403 Neighboring gene STARR-seq mESC enhancer starr_34404 Neighboring gene predicted gene, 34991 Neighboring gene predicted gene, 45949

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_167678.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC154401
    Related
    ENSMUST00000038032.6

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    46118700..46119984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)