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LOC7476889 probable WRKY transcription factor 21 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7476889, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7476889
Gene description
probable WRKY transcription factor 21
Locus tag
POPTR_005G219500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 5 NC_037289.2 (22203265..22206024)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 5 NC_037289.1 (23150460..23153286)

Chromosome 5 - NC_037289.2Genomic Context describing neighboring genes Neighboring gene GABA transporter 1 Neighboring gene signal recognition particle 9 kDa protein Neighboring gene ethylene-responsive transcription factor 9 Neighboring gene 40S ribosomal protein S15-4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable WRKY transcription factor 21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037289.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    22203265..22206024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002306787.4 → XP_002306823.1  probable WRKY transcription factor 21

    See identical proteins and their annotated locations for XP_002306823.1

    UniProtKB/TrEMBL
    B9H8I2
    Conserved Domains (3) summary
    smart00774
    Location:280 → 337
    WRKY; DNA binding domain
    pfam10533
    Location:240 → 277
    Plant_zn_clust; Plant zinc cluster domain
    cl19887
    Location:15 → 105
    TFCD_C; Tubulin folding cofactor D C terminal

  2. XM_024602206.2 → XP_024457974.1  probable WRKY transcription factor 21

    UniProtKB/TrEMBL
    B9H8I2
    Conserved Domains (3) summary
    smart00774
    Location:280 → 337
    WRKY; DNA binding domain
    pfam10533
    Location:240 → 277
    Plant_zn_clust; Plant zinc cluster domain
    cl19887
    Location:15 → 105
    TFCD_C; Tubulin folding cofactor D C terminal
Nucleotide Protein
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