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Crtc2 CREB regulated transcription coactivator 2 [ Mus musculus (house mouse) ]

Gene ID: 74343, updated on 2-Nov-2024

Summary

Official Symbol
Crtc2provided by MGI
Official Full Name
CREB regulated transcription coactivator 2provided by MGI
Primary source
MGI:MGI:1921593
See related
Ensembl:ENSMUSG00000027936 AllianceGenome:MGI:1921593
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Torc2; 4632407F12Rik
Summary
Predicted to enable cAMP response element binding protein binding activity; chromatin binding activity; and transcription coactivator activity. Involved in gluconeogenesis; glucose homeostasis; and positive regulation of CREB transcription factor activity. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; ear; integumental system; limb; and nervous system. Orthologous to human CRTC2 (CREB regulated transcription coactivator 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in spleen adult (RPKM 33.2), thymus adult (RPKM 31.7) and 28 other tissues See more
Orthologs
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Genomic context

See Crtc2 in Genome Data Viewer
Location:
3 F1; 3 39.21 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (90161475..90171432)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (90253858..90264125)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 3-like 4 Neighboring gene jumping translocation breakpoint Neighboring gene STARR-positive B cell enhancer ABC_E1265 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:90052523-90052632 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:90057967-90058076 Neighboring gene solute carrier family 39 (zinc transporter), member 1 Neighboring gene STARR-positive B cell enhancer ABC_E4558 Neighboring gene DENN domain containing 4B Neighboring gene microRNA 7012 Neighboring gene STARR-positive B cell enhancer ABC_E28 Neighboring gene GATA zinc finger domain containing 2B Neighboring gene STARR-seq mESC enhancer starr_08281

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (7)  1 citation

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables cAMP response element binding protein binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables cAMP response element binding protein binding IEA
Inferred from Electronic Annotation
more info
 
enables chromatin binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
CREB-regulated transcription coactivator 2
Names
TORC-2
transducer of CREB protein 2
transducer of regulated cAMP response element-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357152.2NP_001344081.1  CREB-regulated transcription coactivator 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC119825
    UniProtKB/TrEMBL
    Q3TDX5, Q8R1U3
    Related
    ENSMUST00000136970.8
    Conserved Domains (2) summary
    pfam12885
    Location:1138
    TORC_M; Transducer of regulated CREB activity middle domain
    pfam12886
    Location:435512
    TORC_C; Transducer of regulated CREB activity, C terminus
  2. NM_028881.4NP_083157.1  CREB-regulated transcription coactivator 2 isoform 1

    See identical proteins and their annotated locations for NP_083157.1

    Status: VALIDATED

    Source sequence(s)
    AC119825
    Consensus CDS
    CCDS38501.1
    UniProtKB/Swiss-Prot
    Q3TA52, Q3U182, Q8BH09
    Related
    ENSMUSP00000029545.9, ENSMUST00000029545.15
    Conserved Domains (3) summary
    pfam12884
    Location:1872
    TORC_N; Transducer of regulated CREB activity, N terminus
    pfam12885
    Location:168317
    TORC_M; Transducer of regulated CREB activity middle domain
    pfam12886
    Location:614691
    TORC_C; Transducer of regulated CREB activity, C terminus

RNA

  1. NR_151631.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC119825

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    90161475..90171432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006502153.1XP_006502216.1  CREB-regulated transcription coactivator 2 isoform X2

    Conserved Domains (3) summary
    pfam12884
    Location:1872
    TORC_N; Transducer of regulated CREB activity, N-terminus
    pfam12885
    Location:168317
    TORC_M; Transducer of regulated CREB activity middle domain
    pfam12886
    Location:526603
    TORC_C; Transducer of regulated CREB activity, C-terminus
  2. XM_006502152.1XP_006502215.1  CREB-regulated transcription coactivator 2 isoform X1

    Conserved Domains (3) summary
    pfam12884
    Location:1872
    TORC_N; Transducer of regulated CREB activity, N-terminus
    pfam12885
    Location:145294
    TORC_M; Transducer of regulated CREB activity middle domain
    pfam12886
    Location:591668
    TORC_C; Transducer of regulated CREB activity, C-terminus

RNA

  1. XR_001783761.1 RNA Sequence

  2. XR_375593.1 RNA Sequence

    Related
    ENSMUST00000184882.2
  3. XR_004941409.1 RNA Sequence

  4. XR_001783762.1 RNA Sequence

    Related
    ENSMUST00000130002.8