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TTC17 tetratricopeptide repeat domain 17 [ Pan troglodytes (chimpanzee) ]

Gene ID: 740868, updated on 17-Aug-2024

Summary

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Official Symbol
TTC17provided by VGNC
Official Full Name
tetratricopeptide repeat domain 17provided by VGNC
Primary source
VGNC:VGNC:950
Locus tag
CK820_G0028999
See related
Ensembl:ENSPTRG00000003518
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 9 NC_072407.2 (47374852..47510775)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 11 NC_072409.1 (47178636..47314560)

Chromosome 9 - NC_072407.2Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein K-like Neighboring gene apoptosis inhibitor 5 Neighboring gene peptidyl-prolyl cis-trans isomerase A-like Neighboring gene C-terminal-binding protein 2-like Neighboring gene microRNA mir-670

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    47374852..47510775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001157068.7 → XP_001157068.1  tetratricopeptide repeat protein 17 isoform X6

    UniProtKB/TrEMBL
    A0A2I3S404, A0A2I3SR79, A0A2J8LHT6, A0A6D2XS16
    Related
    ENSPTRP00000079459.1
    Conserved Domains (4) summary
    COG0457
    Location:563 → 718
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:621 → 647
    TPR; TPR repeat [structural motif]
    cd16269
    Location:379 → 390
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:329 → 410
    GBP_C; Guanylate-binding protein, C-terminal domain

  2. XM_009460257.5 → XP_009458532.1  tetratricopeptide repeat protein 17 isoform X1

    UniProtKB/TrEMBL
    A0A2I3RSH9, A0A2I3S404
    Related
    ENSPTRP00000067663.1
    Conserved Domains (7) summary
    smart00028
    Location:689 → 718
    TPR; Tetratricopeptide repeats
    sd00006
    Location:621 → 647
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:1145 → 1175
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:1111 → 1173
    TPR_11; TPR repeat
    pfam13424
    Location:621 → 684
    TPR_12; Tetratricopeptide repeat
    cd16269
    Location:379 → 390
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:329 → 410
    GBP_C; Guanylate-binding protein, C-terminal domain

  3. XM_001157497.7 → XP_001157497.1  tetratricopeptide repeat protein 17 isoform X3

    See identical proteins and their annotated locations for XP_001157497.1

    UniProtKB/TrEMBL
    A0A2I3S404, A0A2J8LHQ8, A0A6D2XEL7, H2Q3F9
    Related
    ENSPTRP00000006108.5
    Conserved Domains (4) summary
    COG0457
    Location:563 → 718
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:621 → 647
    TPR; TPR repeat [structural motif]
    cd16269
    Location:379 → 390
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:329 → 410
    GBP_C; Guanylate-binding protein, C-terminal domain

  4. XM_009460261.4 → XP_009458536.1  tetratricopeptide repeat protein 17 isoform X4

    UniProtKB/TrEMBL
    A0A2I3S404
    Conserved Domains (6) summary
    smart00028
    Location:689 → 718
    TPR; Tetratricopeptide repeats
    sd00006
    Location:621 → 647
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:658 → 718
    TPR_11; TPR repeat
    pfam13424
    Location:621 → 684
    TPR_12; Tetratricopeptide repeat
    cd16269
    Location:379 → 390
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:329 → 410
    GBP_C; Guanylate-binding protein, C-terminal domain

  5. XM_054662227.2 → XP_054518202.1  tetratricopeptide repeat protein 17 isoform X5

    UniProtKB/TrEMBL
    A0A2I3S404

  6. XM_063783984.1 → XP_063640054.1  tetratricopeptide repeat protein 17 isoform X2

    UniProtKB/TrEMBL
    A0A2I3S404

  7. XM_063783985.1 → XP_063640055.1  tetratricopeptide repeat protein 17 isoform X2

    UniProtKB/TrEMBL
    A0A2I3S404

  8. XM_063783986.1 → XP_063640056.1  tetratricopeptide repeat protein 17 isoform X2

    UniProtKB/TrEMBL
    A0A2I3S404
Nucleotide Protein
Heading Accession and Version

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