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1700086O06Rik RIKEN cDNA 1700086O06 gene [ Mus musculus (house mouse) ]

Gene ID: 73516, updated on 22-Oct-2024

Summary

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Official Symbol
1700086O06Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700086O06 geneprovided by MGI
Primary source
MGI:MGI:1920766
See related
Ensembl:ENSMUSG00000097080 AllianceGenome:MGI:1920766
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in adrenal adult (RPKM 22.9), ovary adult (RPKM 12.3) and 28 other tissues See more
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Genomic context

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See 1700086O06Rik in Genome Data Viewer
Location:
18 B3; 18 20.14 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (38371458..38383618, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (38238405..38250565, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene protocadherin 1 Neighboring gene predicted gene, 52328 Neighboring gene RIKEN cDNA 2010320O07 gene Neighboring gene 60S ribosomal protein L17-like Neighboring gene STARR-positive B cell enhancer ABC_E7580 Neighboring gene STARR-seq mESC enhancer starr_44353 Neighboring gene DAP3 binding cell death enhancer 1 Neighboring gene protocadherin 12 Neighboring gene ring finger protein 14 Neighboring gene STARR-seq mESC enhancer starr_44354 Neighboring gene predicted gene, 23205

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015475.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK039796, AK050707, AK078369
    Related
    ENSMUST00000243234.2

  2. NR_027903.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK039796, AK050707, AK078369
    Related
    ENSMUST00000181871.5

  3. NR_027904.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK039796
    Related
    ENSMUST00000181757.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    38371458..38383618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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