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LOC730098 uncharacterized LOC730098 [ Homo sapiens (human) ]

Gene ID: 730098, updated on 23-Nov-2021

Summary

Gene symbol
LOC730098
Gene description
uncharacterized LOC730098
See related
Ensembl:ENSG00000187186
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 19.5), brain (RPKM 2.1) and 6 other tissues See more
Orthologs
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Genomic context

See LOC730098 in Genome Data Viewer
Location:
9p13.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (34664163..34666636, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (34664160..34666042, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene galactose-1-phosphate uridylyltransferase Neighboring gene interleukin 11 receptor subunit alpha Neighboring gene uncharacterized LOC107987063 Neighboring gene C-C motif chemokine ligand 27 Neighboring gene C-C motif chemokine ligand 19 Neighboring gene C-C motif chemokine ligand 21

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General protein information

Preferred Names
uncharacterized protein LOC730098

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001320037.2NP_001306966.1  uncharacterized protein LOC730098

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK296005, AL162231, HY158194
    Consensus CDS
    CCDS83357.1
    UniProtKB/TrEMBL
    B7Z3J9
    Related
    ENSP00000452132.1, ENST00000544078.2
  2. NM_001320038.2NP_001306967.1  uncharacterized protein LOC730098

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) retains an intron in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK296005, AL162231, BC066358
    Consensus CDS
    CCDS83357.1
    UniProtKB/TrEMBL
    B7Z3J9
    Related
    ENSP00000457701.1, ENST00000421828.7

RNA

  1. NR_135148.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) retains an intron compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
    Source sequence(s)
    AK296005, AL162231, BM695963, DB061900, HY030992

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    34664163..34666636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017015106.2XP_016870595.1  uncharacterized protein LOC730098 isoform X1

    UniProtKB/TrEMBL
    B7Z3J9
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