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FAM160A1 family with sequence similarity 160 member A1 [ Homo sapiens (human) ]

Gene ID: 729830, updated on 1-Jun-2020

Summary

Official Symbol
FAM160A1provided by HGNC
Official Full Name
family with sequence similarity 160 member A1provided by HGNC
Primary source
HGNC:HGNC:34237
See related
Ensembl:ENSG00000164142
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in skin (RPKM 6.6), thyroid (RPKM 3.3) and 17 other tissues See more
Orthologs

Genomic context

See FAM160A1 in Genome Data Viewer
Location:
4q31.3
Exon count:
18
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (151409143..151670503)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (152330398..152591655)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene SH3 domain containing 19 Neighboring gene RNA, U6 small nuclear 1282, pseudogene Neighboring gene serine protease 48 Neighboring gene FAM160A1 divergent transcript Neighboring gene RN7SK pseudogene 35 Neighboring gene uncharacterized LOC107986197 Neighboring gene glutamyl-tRNA amidotransferase subunit B Neighboring gene uncharacterized LOC105377488 Neighboring gene uncharacterized LOC102724700

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ43373

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109977.3NP_001103447.1  protein FAM160A1

    See identical proteins and their annotated locations for NP_001103447.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AC079795, AC092611, AC097455
    Consensus CDS
    CCDS47146.1
    UniProtKB/Swiss-Prot
    Q05DH4
    Related
    ENSP00000413196.1, ENST00000435205.6
    Conserved Domains (1) summary
    pfam10257
    Location:88411
    RAI16-like; Retinoic acid induced 16-like protein
  2. NM_001348694.2NP_001335623.1  protein FAM160A1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AC079795, AC092611, AC097455
    Consensus CDS
    CCDS47146.1
    UniProtKB/Swiss-Prot
    Q05DH4
    Conserved Domains (1) summary
    pfam10257
    Location:88411
    RAI16-like; Retinoic acid induced 16-like protein

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    151409143..151670503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024454201.1XP_024309969.1  protein FAM160A1 isoform X1

    Conserved Domains (1) summary
    pfam10257
    Location:88411
    RAI16-like; Retinoic acid induced 16-like protein
  2. XM_011532221.2XP_011530523.1  protein FAM160A1 isoform X1

    See identical proteins and their annotated locations for XP_011530523.1

    UniProtKB/Swiss-Prot
    Q05DH4
    Conserved Domains (1) summary
    pfam10257
    Location:88411
    RAI16-like; Retinoic acid induced 16-like protein
  3. XM_011532223.2XP_011530525.1  protein FAM160A1 isoform X1

    See identical proteins and their annotated locations for XP_011530525.1

    UniProtKB/Swiss-Prot
    Q05DH4
    Conserved Domains (1) summary
    pfam10257
    Location:88411
    RAI16-like; Retinoic acid induced 16-like protein
  4. XM_005263199.1XP_005263256.1  protein FAM160A1 isoform X1

    See identical proteins and their annotated locations for XP_005263256.1

    UniProtKB/Swiss-Prot
    Q05DH4
    Conserved Domains (1) summary
    pfam10257
    Location:88411
    RAI16-like; Retinoic acid induced 16-like protein
  5. XM_011532220.2XP_011530522.1  protein FAM160A1 isoform X1

    See identical proteins and their annotated locations for XP_011530522.1

    UniProtKB/Swiss-Prot
    Q05DH4
    Conserved Domains (1) summary
    pfam10257
    Location:88411
    RAI16-like; Retinoic acid induced 16-like protein
  6. XM_011532224.2XP_011530526.1  protein FAM160A1 isoform X1

    See identical proteins and their annotated locations for XP_011530526.1

    UniProtKB/Swiss-Prot
    Q05DH4
    Related
    ENSP00000421580.1, ENST00000505231.1
    Conserved Domains (1) summary
    pfam10257
    Location:88411
    RAI16-like; Retinoic acid induced 16-like protein
  7. XM_017008583.1XP_016864072.1  protein FAM160A1 isoform X2

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