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SPEN-AS1 SPEN antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 729614, updated on 14-May-2022

Summary

Official Symbol
SPEN-AS1provided by HGNC
Official Full Name
SPEN antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55937
See related
Ensembl:ENSG00000179743
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 2.5), ovary (RPKM 2.5) and 25 other tissues See more
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Genomic context

See SPEN-AS1 in Genome Data Viewer
Location:
1p36.21
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (15834215..15848147, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (15275483..15289413, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (16160710..16174642, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ubiquinol-cytochrome c reductase hinge protein like Neighboring gene ribosomal protein S16 pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 11658 Neighboring gene spen family transcriptional repressor Neighboring gene NFE2L2 motif-containing MPRA enhancer 216 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Clone Names

  • FLJ37453, FLJ42024

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024279.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AL450998
    Related
    ENST00000317122.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    15834215..15848147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    15275483..15289413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)